Os02g0663100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GRAS transcription factor domain containing protein.
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Os02g0663100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GRAS transcription factor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.95 | 0.274 | 12.2 | 0.588 | 1.57 | 1.56 | 0.332 | -0.65 | 0.129 | 5.29 | 28.67 | 261 | -- | -- |
| 34.31 | 0.273 | 12.3 | 0.485 | 1.6 | 1.57 | 0.148 | -- | 0.109 | 5.27 | 28.15 | 249 | -- | -- |
| 34.12 | 0.272 | 12.2 | 0.561 | 1.57 | 1.56 | -- | -0.474 | 0.112 | 5.3 | 28.65 | 249 | -- | -- |
| 34.33 | 0.273 | 12.3 | 0.486 | 1.59 | 1.57 | -- | -- | 0.101 | 5.34 | 28.27 | 236 | -- | -- |
| 124.51 | 0.52 | 12.3 | 0.915 | -- | 2.99 | -- | -0.429 | 0.216 | -- | 32.42 | 270 | -- | -- |
| 68.41 | 0.388 | 12.3 | 0.0677 | 2.02 | -- | 0.221 | -- | -0.235 | 5.08 | -- | -- | -- | -- |
| 68.53 | 0.388 | 12.3 | 0.0674 | 2.02 | -- | -- | -- | -0.236 | 5.07 | -- | -- | -- | -- |
| 123.8 | 0.518 | 12.2 | 0.83 | -- | 3.06 | -- | -- | 0.306 | -- | 31.77 | 264 | -- | -- |
| 39.68 | 0.293 | 12.3 | -- | 1.63 | 1.41 | -- | -- | 0.0157 | 5.22 | 28.45 | 258 | -- | -- |
| 282.62 | 0.786 | 12.3 | 0.14 | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
| 68.65 | 0.388 | 12.3 | -- | 2.02 | -- | -- | -- | -0.244 | 5.07 | -- | -- | -- | -- |
| 140.3 | 0.552 | 12.3 | -- | -- | 2.84 | -- | -- | 0.166 | -- | 32.53 | 268 | -- | -- |
| 283.13 | 0.785 | 12.3 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 9 | 33.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 22 | 34.37 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 30 | 34.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 31 | 34.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 20 |
| 36 | 34.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 72 | 35.38 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 74 | 35.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 78 | 35.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 84 | 35.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 90 | 35.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 94 | 35.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 102 | 35.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 17 |
| 104 | 35.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 112 | 35.72 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 116 | 35.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 125 | 35.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 158 | 35.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 171 | 35.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 186 | 35.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 193 | 35.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 286 | 36.12 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 300 | 36.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 315 | 36.18 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 328 | 36.20 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 497 | 36.47 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 603 | 36.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 608 | 36.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 611 | 36.67 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 621 | 36.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 7 |
| 622 | 36.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 7 |
| 630 | 36.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 812 | 36.89 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 864 | 36.93 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 886 | 36.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 916 | 36.97 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 989 | 37.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 1000 | 37.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |