Os12g0122000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SCARECROW.
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Os12g0122000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SCARECROW.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.38 | 0.343 | 8.41 | 2.96 | 1.58 | 0.622 | -0.829 | 4 | 0.509 | 4.99 | 1 | 11558 | -- | -- |
| 65.99 | 0.378 | 8.55 | 2.41 | 1.65 | 0.764 | -0.51 | -- | 0.312 | 4.92 | 19.99 | 14869 | -- | -- |
| 53.71 | 0.341 | 8.4 | 2.94 | 1.6 | 0.592 | -- | 3.97 | 0.502 | 4.91 | 1.016 | 14751 | -- | -- |
| 67.5 | 0.383 | 8.55 | 2.39 | 1.66 | 0.756 | -- | -- | 0.293 | 4.87 | 19.86 | 14764 | -- | -- |
| 188.36 | 0.639 | 8.35 | 2.79 | -- | 0.738 | -- | 3.69 | 0.539 | -- | 0.8 | 30220 | -- | -- |
| 74.24 | 0.404 | 8.5 | 2.05 | 1.61 | -- | -0.811 | -- | 0.381 | 4.97 | -- | -- | -- | -- |
| 75.92 | 0.408 | 8.5 | 2.05 | 1.6 | -- | -- | -- | 0.385 | 5 | -- | -- | -- | -- |
| 197.82 | 0.655 | 8.57 | 2.39 | -- | 0.667 | -- | -- | 0.279 | -- | 27.85 | 15748 | -- | -- |
| 66.39 | 0.379 | 8.62 | -- | 1.9 | -1.59 | -- | -- | -0.215 | 5.06 | 69.26 | 41764 | -- | -- |
| 210.83 | 0.678 | 8.52 | 2.11 | -- | -- | -- | -- | 0.426 | -- | -- | -- | -- | -- |
| 186.69 | 0.639 | 8.55 | -- | 1.64 | -- | -- | -- | 0.156 | 4.96 | -- | -- | -- | -- |
| 191.08 | 0.644 | 8.67 | -- | -- | -1.77 | -- | -- | -0.184 | -- | 70 | 46778 | -- | -- |
| 328.08 | 0.845 | 8.57 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.52 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 47.90 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 3 | 47.92 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 12 | 48.02 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 15 | 48.05 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 19 | 48.05 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 23 | 48.07 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 46 | 48.22 | temperature | 20.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 56 | 48.27 | temperature | 20.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 188 | 48.71 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 198 | 48.73 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 237 | 48.80 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 305 | 48.91 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 317 | 48.92 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 319 | 48.92 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 350 | 48.95 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 390 | 48.99 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 411 | 49.01 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 434 | 49.03 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 449 | 49.04 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 469 | 49.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 477 | 49.06 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 479 | 49.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 506 | 49.08 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 553 | 49.12 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 637 | 49.18 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 687 | 49.22 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 709 | 49.24 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 943 | 49.40 | temperature | 25.0 | 43200 | < th | dose dependent | no | NA | NA |
| 973 | 49.42 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 991 | 49.43 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 993 | 49.44 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 1 |