BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0283600 Os09g0283600|AK069582
(331 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0283600 Zinc finger, RING-type domain containing protein 512 e-145
Os08g0451800 Zinc finger, RING-type domain containing protein 256 2e-68
Os08g0451900 Zinc finger, RING-type domain containing protein 207 7e-54
Os09g0419500 Zinc finger, RING-type domain containing protein 167 1e-41
Os09g0419600 Zinc finger, RING-type domain containing protein 160 1e-39
Os09g0420100 Zinc finger, RING-type domain containing protein 154 7e-38
Os09g0420000 Zinc finger, RING-type domain containing protein 151 6e-37
Os09g0434900 Zinc finger, RING-type domain containing protein 120 2e-27
Os12g0631200 Zinc finger, RING-type domain containing protein 111 8e-25
Os09g0435200 97 1e-20
Os07g0621500 Zinc finger, RING-type domain containing protein 90 2e-18
Os09g0559000 Zinc finger, RING-type domain containing protein 81 1e-15
Os04g0492100 Similar to ARIADNE-like protein 79 6e-15
Os08g0540300 Zinc finger, RING-type domain containing protein 74 1e-13
Os04g0594000 RWD domain containing protein 72 7e-13
Os09g0513800 Similar to ARIADNE-like protein 70 2e-12
Os11g0599700 68 1e-11
Os04g0180350 65 6e-11
>Os09g0283600 Zinc finger, RING-type domain containing protein
Length = 331
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/331 (79%), Positives = 262/331 (79%)
Query: 1 MDVDELLLIAISHGNNEDGSDGVVGISDEVYAAELQLQELIXXXXXXXXXXXXXDQLDSG 60
MDVDELLLIAISHGNNEDGSDGVVGISDEVYAAELQLQELI DQLDSG
Sbjct: 1 MDVDELLLIAISHGNNEDGSDGVVGISDEVYAAELQLQELIMSSAMAATAAAAADQLDSG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXLVPXXXXXXXXXXXMTLXXXXXXXXXXXXXXXXXXXX 120
LVP MTL
Sbjct: 61 SAVHASSEDAAAAAHAKTSPSSALVPAAECSSSSAAAMTLVASVVKCSCSSSAMAPSATT 120
Query: 121 XXFLFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGGVYCPEDGCASAVD 180
FLFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGGVYCPEDGCASAVD
Sbjct: 121 TSFLFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGGVYCPEDGCASAVD 180
Query: 181 PELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQPTECPAC 240
PELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQPTECPAC
Sbjct: 181 PELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQPTECPAC 240
Query: 241 RRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEG 300
RRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEG
Sbjct: 241 RRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEG 300
Query: 301 CSHITCRCGLEFCYGCGQEWGPTGHSSCQRP 331
CSHITCRCGLEFCYGCGQEWGPTGHSSCQRP
Sbjct: 301 CSHITCRCGLEFCYGCGQEWGPTGHSSCQRP 331
>Os08g0451800 Zinc finger, RING-type domain containing protein
Length = 315
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/208 (58%), Positives = 148/208 (71%), Gaps = 4/208 (1%)
Query: 123 FLFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSG-GGVYCPEDGCASAVDP 181
+FCKICMD VP S AHR S GC HAFCAACLAG++ AK+ V CPE+ C A+DP
Sbjct: 109 LVFCKICMDAVPPSAAHRASRGCDHAFCAACLAGYVGAKIQERIADVRCPEERCRGALDP 168
Query: 182 ELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQPTECPACR 241
ELCQ ILP + F+RW AALC AMVL YCPF DC+ ++ D+ G +ECP+CR
Sbjct: 169 ELCQGILPREVFDRWGAALCEAMVLAAPRAYCPFKDCSAMMLDDAG--EAVTESECPSCR 226
Query: 242 RRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEGC 301
R FC +C V WH GV C Y +L GDRG+ DL VVEMAKG +W+RCP+CK+FV++ +GC
Sbjct: 227 RLFCAQCAVPWHAGVDCAAYKKLGKGDRGKEDLLVVEMAKGKKWKRCPKCKYFVEKSQGC 286
Query: 302 SHITCRCGLEFCYGCGQEWGPTGHSSCQ 329
HITCRCG EFCYGCG +WG T H+SC
Sbjct: 287 LHITCRCGFEFCYGCGGQWGVT-HASCS 313
>Os08g0451900 Zinc finger, RING-type domain containing protein
Length = 228
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 133/192 (69%), Gaps = 8/192 (4%)
Query: 126 CKICMDDVPASDAHRGSHG-CAHAFCAACLAGHIAAKLHSGGG---VYCPEDGCASAVDP 181
C ICM+ +P S+AHRG G CAHAFC ACLAGH+ AK+ SGGG V CP+ C A+DP
Sbjct: 30 CGICMEPMPPSEAHRGGGGGCAHAFCRACLAGHVRAKVESGGGAGAVRCPDPSCGGALDP 89
Query: 182 ELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEII---ADERGGDSDGQPTECP 238
ELC+ LP D FERWCAALC AM G R YCP+ C+E++ AD+ G Q +EC
Sbjct: 90 ELCRGALPGDVFERWCAALCEAMFAGARRTYCPYPGCSEMMVADADDEGCAGVTQ-SECQ 148
Query: 239 ACRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRY 298
ACRR FC RCGV WH GVSC E+G L G+RG DL +V+ A+ W+RCPRC+F+V++
Sbjct: 149 ACRRLFCARCGVPWHAGVSCAEFGRLGEGERGREDLLLVQAARNGGWKRCPRCRFYVEKS 208
Query: 299 EGCSHITCRCGL 310
GC HITCRC +
Sbjct: 209 HGCLHITCRCAI 220
>Os09g0419500 Zinc finger, RING-type domain containing protein
Length = 317
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 124/214 (57%), Gaps = 10/214 (4%)
Query: 125 FCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGG-GVYCPEDGCAS----AV 179
+C ICM+ V A + GC HAFCA+C+ +IAAK+ + CP+ GC A+
Sbjct: 104 YCTICMETVDAIERF-AIPGCTHAFCASCVRQYIAAKVEENVLSIGCPDPGCKDSGGGAL 162
Query: 180 DPELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEIIADERG-GDSDGQPTECP 238
PE C+ ++P F+RW ALC + L YCPF+DC+ ++ D+ G G+ ECP
Sbjct: 163 HPEACRDVIPPQLFQRWGDALCDS-ALSSLKFYCPFSDCSALLVDDPGDGEEAITDAECP 221
Query: 239 ACRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRY 298
C R FC +C V WHGG +C E+ +L +RG DL + ++AK S+W+RCP+CK +V+R
Sbjct: 222 HCSRMFCAQCKVPWHGGATCAEFQKLGKDERGRDDLLLRKVAKDSKWQRCPKCKMYVERV 281
Query: 299 EGCSHITCRCGLEFCYGCGQEWGPTGH--SSCQR 330
EGC I CRCG FCY C H C+R
Sbjct: 282 EGCVFIICRCGHCFCYLCASPMSRDNHHCKKCKR 315
>Os09g0419600 Zinc finger, RING-type domain containing protein
Length = 221
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 117/204 (57%), Gaps = 4/204 (1%)
Query: 124 LFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKL-HSGGGVYCPEDGCASAVDPE 182
+C ICM+ VP + S C HAFC C+ ++AAK+ + V CP+ GC V+PE
Sbjct: 13 FYCSICMETVPGALKFSVSP-CLHAFCVCCIGQYVAAKIGENTADVRCPDPGCGGGVEPE 71
Query: 183 LCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAE-IIADERGGDSDGQPTECPACR 241
C+ ++P + +RW LC A ++ R ++CPF DC+E ++AD G ECP+C
Sbjct: 72 SCRGVVPSEVLDRWGLLLCEAAIVA-RRLHCPFRDCSEPLLADADGEGGGVAEAECPSCH 130
Query: 242 RRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEGC 301
R FC RC V WH GV C E+ EL +RG D+ V +A RW+RCP+C+ +V++ EGC
Sbjct: 131 RLFCARCMVPWHDGVGCEEFQELGEDERGREDVMVRRLAGRERWQRCPQCRMYVEKSEGC 190
Query: 302 SHITCRCGLEFCYGCGQEWGPTGH 325
+ CRCG FCY C H
Sbjct: 191 MFMKCRCGYCFCYACASPMSKELH 214
>Os09g0420100 Zinc finger, RING-type domain containing protein
Length = 292
Score = 154 bits (390), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 126 CKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGGVY-CPEDGCASA-VDPEL 183
C +CM+ + S+ S CAHAFC +C+ ++AAK+ V CP+ GC V+ +
Sbjct: 110 CSVCMEKLQVSEQFTVSF-CAHAFCNSCIGRYVAAKISENVAVIGCPDPGCEEGFVEMDT 168
Query: 184 CQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDC-AEIIADERGGDSDGQPTECPACRR 242
C+ I+P + F+RW +LC + LG + YCPF DC A +I D G + + TECP C R
Sbjct: 169 CRDIIPPELFDRWSVSLCE-LALGEKKYYCPFKDCSALLINDNDGAEKKIRETECPHCHR 227
Query: 243 RFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEGCS 302
FC RC V WH G+ C E+ +L ++GE DL ++A +W+RCP CK FV R +GC
Sbjct: 228 MFCARCRVPWHDGIKCKEFRKLGDDEKGEEDLMFKKLAGKKKWQRCPNCKMFVSRIDGCL 287
Query: 303 HITCR 307
I CR
Sbjct: 288 QIKCR 292
>Os09g0420000 Zinc finger, RING-type domain containing protein
Length = 328
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 116/197 (58%), Gaps = 6/197 (3%)
Query: 126 CKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSG-GGVYCPEDGCAS-AVDPEL 183
C ICMD V AS+ + C+HAFC +C+ G++AAK+ + CP+ GC +V+
Sbjct: 118 CIICMDKVQASEEFL-VNVCSHAFCKSCIGGYVAAKVSDNVAAIGCPDPGCEEGSVEIGQ 176
Query: 184 CQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQP---TECPAC 240
C+ I+P + F RW +L + + YCPF DC+ ++ ++ G D + TECP C
Sbjct: 177 CRDIVPPELFGRWSVSLWESSMGETTKCYCPFKDCSAMLINDNGDGGDAEEIAETECPHC 236
Query: 241 RRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEG 300
R FC C V WH G+ C E+ +L ++G+ DL + ++A +W+RCP+C+ +V++ G
Sbjct: 237 HRMFCASCRVPWHDGIDCKEFRKLGNDEKGKEDLMLKKLAGKKKWQRCPQCRMYVEKSAG 296
Query: 301 CSHITCRCGLEFCYGCG 317
C+ + CRCG FCY C
Sbjct: 297 CTFMRCRCGFFFCYNCA 313
>Os09g0434900 Zinc finger, RING-type domain containing protein
Length = 296
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 102/217 (47%), Gaps = 22/217 (10%)
Query: 124 LFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGGVYCP-------EDGCA 176
+C++CM+ D R S GC HAFC AC+ GHI A++ + G V P
Sbjct: 55 FYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARV-AAGSVPVPCLLAGGGGCSGG 113
Query: 177 SAVDPELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDC-------AEIIADERGGD 229
+ PE C+ +L D F+RWC ALC V G CP+ DC E A
Sbjct: 114 GVMHPERCKKLLDIDVFDRWCVALCERAV-GPARARCPYRDCGEMAALEGEAAAAALPLR 172
Query: 230 SDGQPTECPACRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCP 289
+ CP C R FC +C W + G G A+ ++AKG WRRCP
Sbjct: 173 AAASKASCPTCSRAFCLQCEEPW------DDRHGGGGGGDGGARCALTQLAKGREWRRCP 226
Query: 290 RCKFFVDRYEGCSHITCRCGLEFCYGCGQEWGPTGHS 326
C+ +D+ +GC +TCRCG FCY CG + P +S
Sbjct: 227 SCRAMIDKIDGCKRMTCRCGTVFCYDCGSSFNPRMYS 263
>Os12g0631200 Zinc finger, RING-type domain containing protein
Length = 510
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 97/194 (50%), Gaps = 9/194 (4%)
Query: 144 GCAHAFCAACLAGHIAAKLHSGG-GVYCPEDGCASAVDPELCQPILPEDNFERWCAALCR 202
GCAH FC +CL + KL + + CP+ C + C+ LP ++ A
Sbjct: 212 GCAHTFCYSCLTSYTQEKLQTNKVPIRCPQLRCKYHISASECKSFLPVSCYDSLERAFAE 271
Query: 203 AMVLGGRHVYCPFTDCAEIIADER-------GGDSDGQPTECPACRRRFCERCGVAWHGG 255
A YCPF +C+ ++ + SD ECP C R C CGV WH
Sbjct: 272 AGTSDMERFYCPFPNCSVLLDLSQHFSRASTSSQSDLNCVECPECHRDICINCGVPWHVM 331
Query: 256 VSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEGCSHITCRCGLEFCYG 315
+ C EY L V +R GDL++ +A+ +RWRRC RC+ ++ +GC H+ C CG EFCY
Sbjct: 332 MGCDEYQSLPVDERDAGDLSLHRLAQNNRWRRCQRCRRMIELTQGCFHMNCWCGHEFCYS 391
Query: 316 CGQEWGPTGHSSCQ 329
CG E+ G +CQ
Sbjct: 392 CGAEYT-NGIQTCQ 404
>Os09g0435200
Length = 887
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 95/214 (44%), Gaps = 17/214 (7%)
Query: 126 CKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGG-GVYCPEDGCAS------- 177
C IC D +P D RG C H +C C+ +I K+ G V CP+ CA
Sbjct: 440 CGICFDTLPMLDLFRGL-PCDHKYCLECMTTYIDGKVREGAVPVACPDPECADGGDGGAG 498
Query: 178 AVDPELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQPTEC 237
+ PE C+ + F W L V R YCP C ++ E G+++ C
Sbjct: 499 VLHPEGCKKAIDFAAFTDWGLRLAEGAVPHDRRAYCPNRRCGILL--ETSGEAEPAMAAC 556
Query: 238 PACRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDR 297
PAC+ C CG W S + + +G V ++A RW+ CP+C+ V+R
Sbjct: 557 PACQHLLCATCGGEW----STADDADHRDCSKGPEAAMVKKLADERRWKACPKCRMLVER 612
Query: 298 YEGCSHITCRCGLEFCYGCGQEWGPT--GHSSCQ 329
GC ++CRC + FCY CG + G G CQ
Sbjct: 613 TAGCRVMSCRCRMVFCYLCGLQIGAVLEGKEKCQ 646
>Os07g0621500 Zinc finger, RING-type domain containing protein
Length = 419
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 10/182 (5%)
Query: 144 GCAHAFCAACLAGH--IAAKLHSGGGVYCPEDGCASAVDPELCQPILPEDNFERWCAALC 201
C H FC CL A K H G + C ++GC + + +L + E A
Sbjct: 226 SCGHVFCLTCLVDQCESALKSHDGFPLCCLKNGCKKQLLVVDLRSLLSSEKLEELFRASL 285
Query: 202 RAMVL--GGRHVYCPFTDCAEIIADERGGDSDGQPTECPACRRRFCERCGVAWHGGVSCG 259
RA V G++ +CP DC I D++ +P C AC C +C + +H +SC
Sbjct: 286 RAFVASNAGKYRFCPTPDCPSIY-QVAAADAESKPFVCGACFVEICNKCHLEYHPFISCE 344
Query: 260 EYGELAVGDRGEGDLAVVEMAKGS-RWRRCPRCKFFVDRYEGCSHITCRCGLEFCYGCGQ 318
Y E + + D ++E KG + CP C F +++ +GC+H+ C+CG C+ C +
Sbjct: 345 AYKEY----KEDPDATLLEWRKGKENVKVCPSCHFTIEKADGCNHVECKCGSHICWACLE 400
Query: 319 EW 320
+
Sbjct: 401 NF 402
>Os09g0559000 Zinc finger, RING-type domain containing protein
Length = 525
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 97/213 (45%), Gaps = 13/213 (6%)
Query: 124 LFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGG---GVYCPEDGCASAVD 180
L C IC D S GC+H +C +C G++ A + G + CP+ C +AV
Sbjct: 131 LTCAICFDVFDTGGMR--SAGCSHFYCVSCWRGYVRAAVGDGARCLSLRCPDPSCPAAVV 188
Query: 181 PELCQPILPEDNFERWCAALCRAMVLGGRHV-YCPFTDCAEIIADERGGDSDGQPTECPA 239
EL + ++ ER+ R+ V + +CP C+ + GGD + +
Sbjct: 189 RELVDAVADGEDRERFGWFALRSYVEESAGMRWCPGPGCSRAVEFVGGGDGEESSEVFCS 248
Query: 240 CRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYE 299
C C RCG H VSC + + E + A +A + CP+C+ +++
Sbjct: 249 CGHGLCWRCGEEAHRPVSCKTVAKWVEKNSSESETATWLLAHT---KHCPKCRLPIEKNL 305
Query: 300 GCSHITCR--CGLEFCYGCGQEWGPTGHSSCQR 330
GC H+TCR C EFC+ C + W GH++C R
Sbjct: 306 GCMHMTCRPPCLHEFCWICLKPW--HGHAACSR 336
>Os04g0492100 Similar to ARIADNE-like protein
Length = 464
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 124 LFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGG---VYCPEDGCASAVD 180
L C IC ++ P + + C H FC+AC G+I+ ++ G G + CP+ C +AV
Sbjct: 7 LTCGICFENCPRTSM--SAAACGHPFCSACWRGYISTSINDGPGCLMLRCPDPSCTAAVG 64
Query: 181 PELCQPILPEDNFERWCAALCRAMVLGGRHV-YCPFTDCAEIIADERGGDSDGQPTECPA 239
++ + +++ E++ L R+ + R +CP C + G S C
Sbjct: 65 QDMINSLADDEDREKYGRYLRRSYIEDNRKTKWCPAPGCEYAVEFVMGSGS--YDVNC-N 121
Query: 240 CRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYE 299
C FC C H V C + + + E + +A + CP+CK +++ +
Sbjct: 122 CSYGFCWNCTEEAHRPVDCATVSKWILKNSAESENMNWILANS---KPCPKCKRPIEKNQ 178
Query: 300 GCSHITCR--CGLEFCYGCGQEWGPTGHSS 327
GC HITC C EFC+ C W G +
Sbjct: 179 GCMHITCTPPCKFEFCWLCLGPWSEHGERT 208
>Os08g0540300 Zinc finger, RING-type domain containing protein
Length = 607
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 91/213 (42%), Gaps = 21/213 (9%)
Query: 124 LFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGG---VYCPEDGCASAVD 180
L C IC + +SD S C H +C C G+I+A + G G + CP+ C + V
Sbjct: 153 LTCGICFEGY-SSDVM-SSADCDHFYCHECWEGYISAAISDGPGCLSLRCPDPSCGAMVL 210
Query: 181 PELCQPILPEDNFERWCAALCRAMVLGGRHV-YCPFTDCA---EIIADERGGDSDGQPTE 236
+ + +D+ R+ + RA V + +CP DC E + SDG
Sbjct: 211 QNMINKLAKDDDKVRYARFILRAYVEDSKKTKWCPAPDCTCAVEFV-------SDGNYDV 263
Query: 237 CPACRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVD 296
C+ FC C H V+C + + E + +A + CP+CK ++
Sbjct: 264 SCNCKFSFCWNCTEEAHRPVNCETVSRWILKNSAESENMNWILANS---KPCPKCKRPIE 320
Query: 297 RYEGCSHITCR--CGLEFCYGCGQEWGPTGHSS 327
+ +GC H+TC C EFC+ C W G +
Sbjct: 321 KNQGCMHMTCTPPCKFEFCWLCLGSWAEHGERT 353
>Os04g0594000 RWD domain containing protein
Length = 492
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 125 FCKICMDDVPASDAHRGSHGCAHAFCAACLAG--HIAAKLHSGGGVYCPEDGCASAVDPE 182
C IC+ S+ R C H FC CL + K S + CP+ C +++ P
Sbjct: 199 MCMICLSQSKGSNFIRLP--CQHLFCVKCLGTLCRMHVKEGSVFQLVCPDTKCNASIPPY 256
Query: 183 LCQPILPEDNFERW-CAALCRAMVLGGRHVYCPFTDCAEIIADERGGDSDGQPTECPACR 241
+ + +L ED FERW L +A+ VYCP +I D++ Q CP C
Sbjct: 257 VLKRLLTEDEFERWDRLTLEKALDSMSDVVYCPRC----VIGCLEDEDNNAQ---CPKCS 309
Query: 242 RRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKG--------SRWRRCPRCKF 293
FC C H C E + G ++ E+A+ + R CP+C+
Sbjct: 310 FFFCSFCKEPCHPRRQCLTPEEKLQRRQASGRMSEREVAQEILNIKALYNDVRLCPKCRM 369
Query: 294 FVDRYEGCSHITC-RCGLEFCYGCGQEWGPTGHSS 327
+ + GC+ + C CG FC+ CG+ H S
Sbjct: 370 AISKTAGCNKMVCGNCGQFFCFRCGKAIKGYDHFS 404
>Os09g0513800 Similar to ARIADNE-like protein
Length = 516
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 18/198 (9%)
Query: 144 GCAHAFCAACLAGHIAAKLHSGGG---VYCPEDGCASAVDPELCQPILPEDNFERWCAAL 200
GC+H +C C G+I+A ++ G G + CPE C + V ++ + +++ ++ +
Sbjct: 78 GCSHFYCHECWEGYISAAVNDGPGCLVLQCPEPSCDAIVLEDMINSLTKDEDKVKYARFV 137
Query: 201 CRAMV-LGGRHVYCPFTDCAEIIADERGGDSDGQPTECPACRRRFCERCGVAWHGGVSCG 259
+ + + + +CP DC + G+ D C C+ FC C H VSC
Sbjct: 138 LWSYIGVNNKIKWCPAPDCTCAVEFLGDGNYD---VSC-KCKFSFCWNCAEEAHRPVSCD 193
Query: 260 EYGELAVGDRGEGDLAVVEMAKGSRWRRCPRCKFFVDRYEGCSHITCR--CGLEFCYGCG 317
+ + + E + +A + CP+CK +++ +GC H+TC C EFC+ C
Sbjct: 194 TVSKWILKNSAESENMNWILAYS---KPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCL 250
Query: 318 QEW-----GPTGHSSCQR 330
W G G +C R
Sbjct: 251 GAWSDHGDGTGGFYACNR 268
>Os11g0599700
Length = 200
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 123 FLFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGG-GVYCP------EDGC 175
+ C+ C + D R S GCAH C AC+ GH+ A++ +G V CP C
Sbjct: 42 WFHCEACDEPRLLYDRRRVSGGCAHELCVACVVGHVEARVAAGEVPVRCPFQFPAGSSHC 101
Query: 176 ASAVDPELCQPILPEDNFERWCAALCRAMVLG-GRHVYCPFTDCAEIIADERGGDSDGQP 234
+ V PE C+ +L +F+ WC ALC V G G P DC E + GG+
Sbjct: 102 DAVVHPEDCKDLLYIGDFDAWCVALCELAVGGPGAFARYPNPDCGERLDTGAGGERAVSG 161
Query: 235 TECPACRRRFCERCGVAW 252
C C R FC RC W
Sbjct: 162 ATCLRCSRAFCLRCEQPW 179
>Os04g0180350
Length = 121
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 29/34 (85%)
Query: 123 FLFCKICMDDVPASDAHRGSHGCAHAFCAACLAG 156
LFCKICMDDVP SDAHRGSH CAHAF A CLAG
Sbjct: 76 VLFCKICMDDVPTSDAHRGSHSCAHAFYATCLAG 109
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.142 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,596,015
Number of extensions: 534249
Number of successful extensions: 2260
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 2194
Number of HSP's successfully gapped: 22
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)