Os09g0434900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0434900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 124.21 | 0.524 | 11.1 | 2.51 | 2.11 | -0.505 | 0.402 | -0.1 | 1.03 | 22.3 | 25.5 | 19 | -- | -- |
| 124.25 | 0.519 | 11.1 | 2.54 | 2.11 | -0.508 | 0.431 | -- | 1.04 | 22.3 | 25.47 | 18 | -- | -- |
| 124.53 | 0.524 | 11.1 | 2.38 | 2.09 | -0.478 | -- | -0.414 | 0.985 | 22.3 | 25.5 | 19 | -- | -- |
| 124.99 | 0.521 | 11.1 | 2.53 | 2.1 | -0.518 | -- | -- | 1.04 | 22.2 | 25.4 | 18 | -- | -- |
| 365 | 0.89 | 11 | 2.62 | -- | -0.938 | -- | -0.275 | 1.07 | -- | 26 | 2 | -- | -- |
| 140.31 | 0.555 | 11.1 | 2.42 | 2.25 | -- | 0.589 | -- | 0.781 | 22.9 | -- | -- | -- | -- |
| 141.77 | 0.558 | 11.1 | 2.4 | 2.24 | -- | -- | -- | 0.779 | 22.8 | -- | -- | -- | -- |
| 360.7 | 0.888 | 11 | 2.66 | -- | -0.957 | -- | -- | 1.03 | -- | 26.3 | 10 | -- | -- |
| 286.7 | 0.793 | 11.1 | -- | 2.16 | -0.3 | -- | -- | 0.654 | 22.6 | 25.4 | 18 | -- | -- |
| 453.72 | 0.995 | 11.1 | 2.44 | -- | -- | -- | -- | 0.794 | -- | -- | -- | -- | -- |
| 292.97 | 0.801 | 11.2 | -- | 2.26 | -- | -- | -- | 0.513 | 22.9 | -- | -- | -- | -- |
| 545.28 | 1.09 | 11.1 | -- | -- | -0.799 | -- | -- | 0.7 | -- | 26.3 | 10 | -- | -- |
| 611.05 | 1.15 | 11.1 | -- | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.99 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 2 | 116.00 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 4 | 116.17 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 7 |
| 10 | 117.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 21 | 117.96 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 22 | 118.03 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 45 | 118.71 | radiation | 10.0 | 30 | < th | dose dependent | sin | 6 | NA |
| 64 | 119.23 | temperature | 25.0 | 30 | < th | dose independent | rect. | 24 | 18 |
| 85 | 119.45 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 87 | 119.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 101 | 119.91 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 107 | 120.14 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 121 | 120.57 | radiation | 1.0 | 90 | > th | dose independent | sin | 7 | NA |
| 128 | 120.73 | radiation | 1.0 | 90 | < th | dose independent | sin | 7 | NA |
| 133 | 120.77 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 158 | 121.10 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 211 | 121.67 | temperature | 25.0 | 10 | > th | dose dependent | sin | 9 | NA |
| 216 | 121.70 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 217 | 121.70 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 241 | 121.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 247 | 122.02 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 10 |
| 254 | 122.15 | temperature | 25.0 | 10 | < th | dose dependent | sin | 0 | NA |
| 261 | 122.24 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 266 | 122.28 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 17 |
| 277 | 122.37 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 290 | 122.44 | wind | 7.0 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 300 | 122.53 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 17 |
| 307 | 122.57 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 6 |
| 317 | 122.64 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 320 | 122.66 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 17 |
| 353 | 122.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 23 |
| 358 | 122.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 364 | 122.86 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 12 |
| 382 | 122.93 | radiation | 1.0 | 90 | < th | dose independent | rect. | 24 | 8 |
| 385 | 122.96 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 390 | 122.99 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 24 | 9 |
| 391 | 122.99 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 435 | 123.18 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 447 | 123.23 | wind | 7.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 485 | 123.36 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 502 | 123.38 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 507 | 123.40 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 10 |
| 523 | 123.44 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 539 | 123.52 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 558 | 123.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 576 | 123.64 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 587 | 123.67 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 601 | 123.70 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 602 | 123.70 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 642 | 123.81 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 11 | 19 |
| 648 | 123.83 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 660 | 123.86 | temperature | 25.0 | 30 | > th | dose independent | sin | 4 | NA |
| 669 | 123.89 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 702 | 123.99 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 719 | 124.04 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 4 |
| 733 | 124.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 20 |
| 735 | 124.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 752 | 124.15 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 760 | 124.17 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 766 | 124.20 | temperature | 25.0 | 30 | < th | dose independent | sin | 3 | NA |
| 808 | 124.35 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 24 | 6 |
| 810 | 124.35 | radiation | 1.0 | 90 | > th | dose independent | rect. | 17 | 22 |
| 827 | 124.39 | temperature | 10.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 939 | 124.66 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 24 | 2 |
| 955 | 124.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 18 |
| 961 | 124.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 978 | 124.72 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |