BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0434900 Os09g0434900|AK120863
(296 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0434900 Zinc finger, RING-type domain containing protein 461 e-130
Os11g0599700 142 2e-34
Os09g0283600 Zinc finger, RING-type domain containing protein 119 3e-27
Os08g0451800 Zinc finger, RING-type domain containing protein 116 2e-26
Os09g0419500 Zinc finger, RING-type domain containing protein 113 2e-25
Os09g0419600 Zinc finger, RING-type domain containing protein 110 1e-24
Os09g0435200 105 5e-23
Os09g0420000 Zinc finger, RING-type domain containing protein 98 8e-21
Os09g0420100 Zinc finger, RING-type domain containing protein 93 3e-19
Os08g0451900 Zinc finger, RING-type domain containing protein 84 9e-17
Os12g0631200 Zinc finger, RING-type domain containing protein 74 1e-13
>Os09g0434900 Zinc finger, RING-type domain containing protein
Length = 296
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/283 (83%), Positives = 235/283 (83%)
Query: 14 QELDREQYLQELIRGSMLDXXXXXXXRAGRVRPLTDDEIGRFYCEVCMEWKLVFDRFRVS 73
QELDREQYLQELIRGSMLD RAGRVRPLTDDEIGRFYCEVCMEWKLVFDRFRVS
Sbjct: 14 QELDREQYLQELIRGSMLDPPSSSSSRAGRVRPLTDDEIGRFYCEVCMEWKLVFDRFRVS 73
Query: 74 DGCPHAFCVACVVGHIEARVAAGSVPVPCLLAXXXXXXXXXVMHPERCKKLLDIDVFDRW 133
DGCPHAFCVACVVGHIEARVAAGSVPVPCLLA VMHPERCKKLLDIDVFDRW
Sbjct: 74 DGCPHAFCVACVVGHIEARVAAGSVPVPCLLAGGGGCSGGGVMHPERCKKLLDIDVFDRW 133
Query: 134 CVALCERAVGPARARCPYRDCGXXXXXXXXXXXXXXXXXXXXXXXSCPTCSRAFCLQCEE 193
CVALCERAVGPARARCPYRDCG SCPTCSRAFCLQCEE
Sbjct: 134 CVALCERAVGPARARCPYRDCGEMAALEGEAAAAALPLRAAASKASCPTCSRAFCLQCEE 193
Query: 194 PWDDRHXXXXXXXXXARCALTQLAKGREWRRCPSCRAMIDKIDGCKRMTCRCGTVFCYDC 253
PWDDRH ARCALTQLAKGREWRRCPSCRAMIDKIDGCKRMTCRCGTVFCYDC
Sbjct: 194 PWDDRHGGGGGGDGGARCALTQLAKGREWRRCPSCRAMIDKIDGCKRMTCRCGTVFCYDC 253
Query: 254 GSSFNPRMYSCKCTPRKSSQSEEEDGFIDLTCSDRPLNLGNHC 296
GSSFNPRMYSCKCTPRKSSQSEEEDGFIDLTCSDRPLNLGNHC
Sbjct: 254 GSSFNPRMYSCKCTPRKSSQSEEEDGFIDLTCSDRPLNLGNHC 296
>Os11g0599700
Length = 200
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 100/180 (55%), Gaps = 10/180 (5%)
Query: 23 QELIRGSMLDXXXXXXXRAGRVRPLTDDEIGRFYCEVCMEWKLVFDRFRVSDGCPHAFCV 82
QE + M RV PL+DD+IG F+CE C E +L++DR RVS GC H CV
Sbjct: 11 QEFLDACMPSPSSAREAARRRVPPLSDDDIGWFHCEACDEPRLLYDRRRVSGGCAHELCV 70
Query: 83 ACVVGHIEARVAAGSVPVPCLLAXXXXXXX-XXVMHPERCKKLLDIDVFDRWCVALCERA 141
ACVVGH+EARVAAG VPV C V+HPE CK LL I FD WCVALCE A
Sbjct: 71 ACVVGHVEARVAAGEVPVRCPFQFPAGSSHCDAVVHPEDCKDLLYIGDFDAWCVALCELA 130
Query: 142 VG--PARARCPYRDCGXXXXXXXXXXXXXXXXXXXXXXXSCPTCSRAFCLQCEEPWDDRH 199
VG A AR P DCG +C CSRAFCL+CE+PWD+RH
Sbjct: 131 VGGPGAFARYPNPDCG-------ERLDTGAGGERAVSGATCLRCSRAFCLRCEQPWDERH 183
>Os09g0283600 Zinc finger, RING-type domain containing protein
Length = 331
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 97/217 (44%), Gaps = 22/217 (10%)
Query: 55 FYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARV-AAGSVPVPCLLAXXXXXXXX 113
+C++CM+ D R S GC HAFC AC+ GHI A++ + G V P
Sbjct: 124 LFCKICMDDVPASDAHRGSHGCAHAFCAACLAGHIAAKLHSGGGVYCP-------EDGCA 176
Query: 114 XVMHPERCKKLLDIDVFDRWCVALCERAV-GPARARCPYRDCGXXXXXXXXXXXXXXXXX 172
+ PE C+ +L D F+RWC ALC V G CP+ DC
Sbjct: 177 SAVDPELCQPILPEDNFERWCAALCRAMVLGGRHVYCPFTDC-------AEIIADERGGD 229
Query: 173 XXXXXXSCPTCSRAFCLQCEEPW------DDRHXXXXXXXXXARCALTQLAKGREWRRCP 226
CP C R FC +C W + A+ ++AKG WRRCP
Sbjct: 230 SDGQPTECPACRRRFCERCGVAWHGGVSCGEYGELAVGDRGEGDLAVVEMAKGSRWRRCP 289
Query: 227 SCRAMIDKIDGCKRMTCRCGTVFCYDCGSSFNPRMYS 263
C+ +D+ +GC +TCRCG FCY CG + P +S
Sbjct: 290 RCKFFVDRYEGCSHITCRCGLEFCYGCGQEWGPTGHS 326
>Os08g0451800 Zinc finger, RING-type domain containing protein
Length = 315
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 98/217 (45%), Gaps = 21/217 (9%)
Query: 56 YCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPCLLAXXXXXXXXXV 115
+C++CM+ R S GC HAFC AC+ G++ A++ V C
Sbjct: 111 FCKICMDAVPPSAAHRASRGCDHAFCAACLAGYVGAKIQERIADVRC-----PEERCRGA 165
Query: 116 MHPERCKKLLDIDVFDRWCVALCERAVGPA-RARCPYRDCGXXXXXXXXXXXXXXXXXXX 174
+ PE C+ +L +VFDRW ALCE V A RA CP++DC
Sbjct: 166 LDPELCQGILPREVFDRWGAALCEAMVLAAPRAYCPFKDCSAMMLDDAGEAVTES----- 220
Query: 175 XXXXSCPTCSRAFCLQCEEPWDD------RHXXXXXXXXXARCALTQLAKGREWRRCPSC 228
CP+C R FC QC PW + ++AKG++W+RCP C
Sbjct: 221 ----ECPSCRRLFCAQCAVPWHAGVDCAAYKKLGKGDRGKEDLLVVEMAKGKKWKRCPKC 276
Query: 229 RAMIDKIDGCKRMTCRCGTVFCYDCGSSFNPRMYSCK 265
+ ++K GC +TCRCG FCY CG + SC
Sbjct: 277 KYFVEKSQGCLHITCRCGFEFCYGCGGQWGVTHASCS 313
>Os09g0419500 Zinc finger, RING-type domain containing protein
Length = 317
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 102/230 (44%), Gaps = 14/230 (6%)
Query: 42 GRVRPLTDDEIGRFYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVP 101
G+ P D YC +CME +RF + GC HAFC +CV +I A+V + +
Sbjct: 90 GQATPSVDASWKPDYCTICMETVDAIERFAIP-GCTHAFCASCVRQYIAAKVEENVLSIG 148
Query: 102 CLLAXXXXXXXXXVMHPERCKKLLDIDVFDRWCVALCERAVGPARARCPYRDCGXXXXXX 161
C +HPE C+ ++ +F RW ALC+ A+ + CP+ DC
Sbjct: 149 CP-DPGCKDSGGGALHPEACRDVIPPQLFQRWGDALCDSALSSLKFYCPFSDCSALLVDD 207
Query: 162 XXXXXXXXXXXXXXXXXSCPTCSRAFCLQCEEPWD------DRHXXXXXXXXXARCALTQ 215
CP CSR FC QC+ PW + L +
Sbjct: 208 PGDGEEAITDA------ECPHCSRMFCAQCKVPWHGGATCAEFQKLGKDERGRDDLLLRK 261
Query: 216 LAKGREWRRCPSCRAMIDKIDGCKRMTCRCGTVFCYDCGSSFNPRMYSCK 265
+AK +W+RCP C+ +++++GC + CRCG FCY C S + + CK
Sbjct: 262 VAKDSKWQRCPKCKMYVERVEGCVFIICRCGHCFCYLCASPMSRDNHHCK 311
>Os09g0419600 Zinc finger, RING-type domain containing protein
Length = 221
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 53 GRFYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPCLLAXXXXXXX 112
G FYC +CME +F VS C HAFCV C+ ++ A++ + V C
Sbjct: 11 GEFYCSICMETVPGALKFSVSP-CLHAFCVCCIGQYVAAKIGENTADVRC-----PDPGC 64
Query: 113 XXVMHPERCKKLLDIDVFDRWCVALCERAVGPARARCPYRDCGXXXXXXXXXXXXXXXXX 172
+ PE C+ ++ +V DRW + LCE A+ R CP+RDC
Sbjct: 65 GGGVEPESCRGVVPSEVLDRWGLLLCEAAIVARRLHCPFRDC------SEPLLADADGEG 118
Query: 173 XXXXXXSCPTCSRAFCLQCEEPWDDR------HXXXXXXXXXARCALTQLAKGREWRRCP 226
CP+C R FC +C PW D + +LA W+RCP
Sbjct: 119 GGVAEAECPSCHRLFCARCMVPWHDGVGCEEFQELGEDERGREDVMVRRLAGRERWQRCP 178
Query: 227 SCRAMIDKIDGCKRMTCRCGTVFCYDCGSSFNPRMYSCK 265
CR ++K +GC M CRCG FCY C S + ++ CK
Sbjct: 179 QCRMYVEKSEGCMFMKCRCGYCFCYACASPMSKELHYCK 217
>Os09g0435200
Length = 887
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 43 RVRPLTDDEIGRFYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPC 102
RV PL D ++ F C +C + + D FR C H +C+ C+ +I+ +V G+VPV C
Sbjct: 426 RVLPLADGDLPTFDCGICFDTLPMLDLFR-GLPCDHKYCLECMTTYIDGKVREGAVPVAC 484
Query: 103 LLAX--XXXXXXXXVMHPERCKKLLDIDVFDRWCVALCERAV-GPARARCPYRDCGXXXX 159
V+HPE CKK +D F W + L E AV RA CP R CG
Sbjct: 485 PDPECADGGDGGAGVLHPEGCKKAIDFAAFTDWGLRLAEGAVPHDRRAYCPNRRCGILLE 544
Query: 160 XXXXXXXXXXXXXXXXXXXSCPTCSRAFCLQCEEPW---DDRHXXXXXXXXXARCALTQL 216
+CP C C C W DD A + +L
Sbjct: 545 TSGEAEPAMA---------ACPACQHLLCATCGGEWSTADDADHRDCSKGPEA-AMVKKL 594
Query: 217 AKGREWRRCPSCRAMIDKIDGCKRMTCRCGTVFCYDCG 254
A R W+ CP CR ++++ GC+ M+CRC VFCY CG
Sbjct: 595 ADERRWKACPKCRMLVERTAGCRVMSCRCRMVFCYLCG 632
>Os09g0420000 Zinc finger, RING-type domain containing protein
Length = 328
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 95/218 (43%), Gaps = 16/218 (7%)
Query: 55 FYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPCLLAXXXXXXXXX 114
F C +CM+ + F V + C HAFC +C+ G++ A+V+ + C
Sbjct: 116 FTCIICMDKVQASEEFLV-NVCSHAFCKSCIGGYVAAKVSDNVAAIGC----PDPGCEEG 170
Query: 115 VMHPERCKKLLDIDVFDRWCVALCERAVG-PARARCPYRDCGXXXXXXXXXXXXXXXXXX 173
+ +C+ ++ ++F RW V+L E ++G + CP++DC
Sbjct: 171 SVEIGQCRDIVPPELFGRWSVSLWESSMGETTKCYCPFKDCSAMLINDNGDGGDAEEIAE 230
Query: 174 XXXXXSCPTCSRAFCLQCEEPWDDR------HXXXXXXXXXARCALTQLAKGREWRRCPS 227
CP C R FC C PW D L +LA ++W+RCP
Sbjct: 231 T----ECPHCHRMFCASCRVPWHDGIDCKEFRKLGNDEKGKEDLMLKKLAGKKKWQRCPQ 286
Query: 228 CRAMIDKIDGCKRMTCRCGTVFCYDCGSSFNPRMYSCK 265
CR ++K GC M CRCG FCY+C + ++ CK
Sbjct: 287 CRMYVEKSAGCTFMRCRCGFFFCYNCAAPMTKLVHYCK 324
>Os09g0420100 Zinc finger, RING-type domain containing protein
Length = 292
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 57 CEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPCLLAXXXXXXXXXVM 116
C VCME V ++F VS C HAFC +C+ ++ A+++ + C +
Sbjct: 110 CSVCMEKLQVSEQFTVS-FCAHAFCNSCIGRYVAAKISENVAVIGC----PDPGCEEGFV 164
Query: 117 HPERCKKLLDIDVFDRWCVALCERAVGPARARCPYRDCGXXXXXXXXXXXXXXXXXXXXX 176
+ C+ ++ ++FDRW V+LCE A+G + CP++DC
Sbjct: 165 EMDTCRDIIPPELFDRWSVSLCELALGEKKYYCPFKDCS------ALLINDNDGAEKKIR 218
Query: 177 XXSCPTCSRAFCLQCEEPWDDR------HXXXXXXXXXARCALTQLAKGREWRRCPSCRA 230
CP C R FC +C PW D +LA ++W+RCP+C+
Sbjct: 219 ETECPHCHRMFCARCRVPWHDGIKCKEFRKLGDDEKGEEDLMFKKLAGKKKWQRCPNCKM 278
Query: 231 MIDKIDGCKRMTCR 244
+ +IDGC ++ CR
Sbjct: 279 FVSRIDGCLQIKCR 292
>Os08g0451900 Zinc finger, RING-type domain containing protein
Length = 228
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 81/201 (40%), Gaps = 24/201 (11%)
Query: 57 CEVCMEWKLVFDRFRVSDG-CPHAFCVACVVGHIEARV----AAGSVPVPCLLAXXXXXX 111
C +CME + R G C HAFC AC+ GH+ A+V AG+V P
Sbjct: 30 CGICMEPMPPSEAHRGGGGGCAHAFCRACLAGHVRAKVESGGGAGAVRCP-------DPS 82
Query: 112 XXXVMHPERCKKLLDIDVFDRWCVALCERA-VGPARARCPYRDCGXXXXXXXXXXXXXXX 170
+ PE C+ L DVF+RWC ALCE G R CPY C
Sbjct: 83 CGGALDPELCRGALPGDVFERWCAALCEAMFAGARRTYCPYPGC-----SEMMVADADDE 137
Query: 171 XXXXXXXXSCPTCSRAFCLQCEEPWD------DRHXXXXXXXXXARCALTQLAKGREWRR 224
C C R FC +C PW + L Q A+ W+R
Sbjct: 138 GCAGVTQSECQACRRLFCARCGVPWHAGVSCAEFGRLGEGERGREDLLLVQAARNGGWKR 197
Query: 225 CPSCRAMIDKIDGCKRMTCRC 245
CP CR ++K GC +TCRC
Sbjct: 198 CPRCRFYVEKSHGCLHITCRC 218
>Os12g0631200 Zinc finger, RING-type domain containing protein
Length = 510
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 88/231 (38%), Gaps = 16/231 (6%)
Query: 44 VRPLTDDEIGRFYCEVCMEWKLVFDRFRVSDGCPHAFCVACVVGHIEARVAAGSVPVPCL 103
+ L+ E+G C +C E K +V GC H FC +C+ + + ++ VP+ C
Sbjct: 185 IMYLSPYEVGT--CSICCEEKRGAQMIKV--GCAHTFCYSCLTSYTQEKLQTNKVPIRC- 239
Query: 104 LAXXXXXXXXXVMHPERCKKLLDIDVFDRWCVALCERAVGPA-RARCPYRDCGXXXXXXX 162
+ CK L + +D A E R CP+ +C
Sbjct: 240 ----PQLRCKYHISASECKSFLPVSCYDSLERAFAEAGTSDMERFYCPFPNCSVLLDLSQ 295
Query: 163 XXXXXXXXXXXXXXXXSCPTCSRAFCLQCEEPW------DDRHXXXXXXXXXARCALTQL 216
CP C R C+ C PW D+ +L +L
Sbjct: 296 HFSRASTSSQSDLNCVECPECHRDICINCGVPWHVMMGCDEYQSLPVDERDAGDLSLHRL 355
Query: 217 AKGREWRRCPSCRAMIDKIDGCKRMTCRCGTVFCYDCGSSFNPRMYSCKCT 267
A+ WRRC CR MI+ GC M C CG FCY CG+ + + +C+C
Sbjct: 356 AQNNRWRRCQRCRRMIELTQGCFHMNCWCGHEFCYSCGAEYTNGIQTCQCV 406
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.141 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,236,471
Number of extensions: 333400
Number of successful extensions: 1127
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1097
Number of HSP's successfully gapped: 11
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)