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Os09g0419500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.86 (0.0292) R2 : 0.672
β1 : 1.82 (0.107) R2dD : 0.216 R2D : 0.196
β2 : 2.09 (0.0839) R2dC : 0.541 R2C : 0.318
β3 : -0.767 (0.0722) R2dE : 0.0978 R2E : -0.0713
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.436 (0.0623) R2dN8 : 0.0481 R2N8 : -0.00558
σ : 0.546
deviance : 137.4
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C
peak time of C : 17.9
E
wheather : temperature
threshold : 30.34
memory length : 199
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.67
open length of G : 18.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.95 0.544 5.87 1.62 2.18 -0.97 -1.69 1.69 0.421 18.3 30.05 242 9.01 18
137.12 0.545 5.86 1.8 2.08 -0.778 -0.573 -- 0.409 17.9 30.4 198 8.67 18.4
139.49 0.55 5.89 1.63 2.18 -0.928 -- 1.48 0.423 18.3 30.09 223 9.05 18
137.4 0.546 5.86 1.82 2.09 -0.767 -- -- 0.436 17.9 30.34 199 8.67 18.3
213.59 0.681 5.85 1.88 -- -1.25 -- -0.336 0.318 -- 51.97 914 11.5 18.4
168.77 0.609 5.83 1.94 1.72 -- -0.0137 -- 0.452 17.5 -- -- -- --
168.77 0.608 5.83 1.94 1.72 -- -- -- 0.452 17.5 -- -- -- --
158.41 0.586 5.82 1.93 -- -1.82 -- -- 0.409 -- 133.2 516 17.4 16.1
223.24 0.696 5.86 -- 2.03 -0.883 -- -- 0.241 18.2 29.74 193 9.03 18
323.1 0.84 5.81 1.88 -- -- -- -- 0.41 -- -- -- -- --
267.55 0.765 5.88 -- 1.69 -- -- -- 0.236 17.6 -- -- -- --
253.38 0.741 5.85 -- -- -1.79 -- -- 0.226 -- 157.9 461 18.3 15.4
416.25 0.952 5.86 -- -- -- -- -- 0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.45 temperature 30.0 270 < th dose independent rect. 9 18
14 139.72 wind 7.0 270 < th dose independent rect. 3 15
15 139.73 temperature 10.0 90 > th dose dependent rect. 4 16
22 140.58 temperature 30.0 270 < th dose independent rect. 7 8
24 140.65 radiation 1.0 270 < th dose independent rect. 7 20
35 141.36 radiation 10.0 270 < th dose dependent rect. 9 18
43 141.75 radiation 1.0 270 < th dose independent rect. 12 15
47 141.79 atmosphere 1010.0 270 < th dose independent rect. 18 9
62 142.32 temperature 10.0 270 > th dose dependent rect. 3 5
64 142.38 radiation 1.0 270 < th dose independent rect. 17 10
66 142.43 radiation 1.0 270 < th dose independent rect. 15 12
70 142.50 radiation 10.0 270 < th dose dependent rect. 17 10
73 142.55 radiation 10.0 270 < th dose dependent rect. 15 12
86 142.82 temperature 15.0 270 > th dose independent rect. 18 9
91 142.93 humidity 60.0 270 > th dose independent rect. 8 19
100 143.22 atmosphere 1015.0 270 < th dose independent rect. 7 20
109 143.36 atmosphere 995.0 270 > th dose independent rect. 7 20
115 143.54 temperature 30.0 270 < th dose independent rect. 17 10
119 143.61 humidity 60.0 270 > th dose independent rect. 18 9
121 143.64 precipitation 0.1 270 < th dose independent rect. 3 15
122 143.64 precipitation 0.1 270 < th dose dependent rect. 3 15
124 143.72 humidity 80.0 270 > th dose independent rect. 3 4
129 143.82 atmosphere 995.0 270 > th dose independent rect. 18 9
139 143.95 temperature 20.0 270 > th dose dependent rect. 4 2
155 144.05 temperature 10.0 270 > th dose independent rect. 3 15
156 144.05 atmosphere 1015.0 270 < th dose independent rect. 3 15
168 144.19 wind 9.0 270 < th dose independent rect. 18 9
207 144.88 precipitation 0.1 270 < th dose independent rect. 3 4
209 144.88 precipitation 0.1 270 < th dose dependent rect. 3 4
221 145.04 radiation 1.0 90 < th dose dependent sin 11 NA
225 145.08 humidity 50.0 270 > th dose dependent rect. 8 19
227 145.10 humidity 60.0 270 > th dose independent rect. 7 8
232 145.13 wind 9.0 270 < th dose dependent rect. 3 15
238 145.20 radiation 20.0 270 < th dose independent rect. 3 4
240 145.21 wind 9.0 270 < th dose independent rect. 3 4
241 145.21 temperature 10.0 270 > th dose independent rect. 3 4
243 145.21 temperature 30.0 270 < th dose independent rect. 3 4
244 145.21 humidity 50.0 270 > th dose independent rect. 3 4
246 145.21 atmosphere 995.0 270 > th dose independent rect. 3 4
247 145.21 atmosphere 1015.0 270 < th dose independent rect. 3 4
250 145.21 temperature 10.0 270 > th dose independent rect. 7 20
251 145.22 precipitation 0.1 270 < th dose independent rect. 18 9
252 145.22 precipitation 0.1 270 < th dose dependent rect. 18 9
259 145.39 temperature 15.0 10 > th dose dependent rect. 4 6
263 145.43 radiation 40.0 270 < th dose dependent rect. 3 4
271 145.56 temperature 10.0 270 > th dose dependent rect. 19 8
292 145.70 wind 1.0 270 > th dose independent rect. 3 4
302 145.83 wind 7.0 270 < th dose independent rect. 14 17
305 145.85 humidity 50.0 270 > th dose dependent rect. 3 4
307 145.89 atmosphere 1015.0 10 < th dose independent rect. 10 18
310 145.92 precipitation 0.1 270 < th dose independent rect. 7 20
311 145.92 precipitation 0.1 270 < th dose dependent rect. 7 20
322 145.98 temperature 15.0 270 > th dose dependent rect. 12 9
392 146.47 atmosphere 995.0 10 > th dose independent rect. 10 18
424 146.67 wind 1.0 270 > th dose independent rect. 7 7
431 146.71 temperature 15.0 10 > th dose independent rect. 10 18
440 146.76 temperature 30.0 270 < th dose independent rect. 22 15
455 146.87 temperature 30.0 720 < th dose independent rect. 24 12
473 146.94 temperature 25.0 10 > th dose dependent rect. 15 18
474 146.95 wind 1.0 30 < th dose independent rect. 22 5
485 146.97 radiation 40.0 30 < th dose independent rect. 4 6
486 146.97 precipitation 0.1 270 < th dose independent rect. 14 17
488 146.97 precipitation 0.1 270 < th dose dependent rect. 14 17
503 147.01 radiation 1.0 90 < th dose independent sin 12 NA
529 147.08 wind 9.0 270 < th dose dependent rect. 3 4
580 147.23 wind 9.0 270 < th dose independent rect. 7 20
584 147.24 radiation 1.0 90 > th dose independent rect. 17 16
636 147.46 atmosphere 995.0 270 > th dose dependent rect. 3 4
640 147.50 temperature 30.0 10 < th dose independent rect. 4 6
649 147.52 temperature 10.0 270 > th dose independent rect. 7 7
650 147.52 atmosphere 995.0 270 > th dose independent rect. 7 7
651 147.52 atmosphere 1015.0 270 < th dose independent rect. 7 7
652 147.52 temperature 10.0 270 > th dose independent rect. 14 17
655 147.55 temperature 25.0 10 > th dose dependent rect. 13 20
667 147.62 wind 7.0 10 < th dose independent rect. 4 6
688 147.65 atmosphere 995.0 90 > th dose dependent rect. 4 6
696 147.69 precipitation 0.1 270 < th dose independent rect. 7 7
699 147.69 precipitation 0.1 270 < th dose dependent rect. 7 7
701 147.71 temperature 25.0 10 > th dose dependent sin 11 NA
722 147.75 wind 7.0 10 < th dose independent rect. 5 15
775 147.89 atmosphere 1015.0 270 < th dose independent rect. 22 15
799 147.95 wind 1.0 270 > th dose independent rect. 8 19
819 148.01 humidity 50.0 270 > th dose dependent rect. 18 9
822 148.02 wind 3.0 10 < th dose dependent rect. 21 7
825 148.04 radiation 1.0 90 > th dose independent sin 11 NA
844 148.10 wind 7.0 270 < th dose independent rect. 12 21
878 148.15 humidity 50.0 270 > th dose dependent rect. 8 6
904 148.21 temperature 10.0 270 > th dose dependent rect. 12 20
919 148.26 temperature 10.0 10 > th dose independent rect. 4 6
921 148.26 humidity 50.0 10 > th dose independent rect. 4 6
923 148.26 atmosphere 1015.0 10 < th dose independent rect. 4 6
974 148.37 temperature 25.0 30 > th dose independent rect. 14 19
979 148.38 precipitation 0.1 10 < th dose independent rect. 10 18
980 148.38 atmosphere 995.0 10 > th dose dependent rect. 4 6
981 148.38 precipitation 0.1 10 < th dose dependent rect. 10 18
991 148.41 wind 9.0 270 < th dose independent rect. 7 7