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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0419600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0195) R2 : 9.74e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00273 (0.041) R2dN8 : 1.26e-05 R2N8 : 9.74e-06
σ : 0.366
deviance : 61.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.75 0.357 3.14 -0.0399 0.142 -1.33 -0.249 3.26 0.0331 4.4 0.1723 638 -- --
58.87 0.357 3.11 -0.00406 0.14 -0.587 -0.315 -- 0.0197 4.42 0.142 491 -- --
57.91 0.354 3.14 -0.0345 0.142 -1.32 -- 3.29 0.0345 4.65 0.4998 638 -- --
58.87 0.357 3.11 0.00314 0.145 -0.622 -- -- 0.0172 5.11 1.5 473 -- --
58.97 0.358 3.14 -0.0332 -- -1.29 -- 3.14 0.0387 -- 0.4999 650 -- --
60.37 0.364 3.12 0.0498 0.144 -- -0.208 -- 0.00418 4.65 -- -- -- --
60.49 0.364 3.12 0.051 0.143 -- -- -- 0.00526 4.62 -- -- -- --
59.97 0.361 3.11 0.0021 -- -0.613 -- -- 0.0211 -- 1.335 473 -- --
58.87 0.357 3.11 -- 0.144 -0.619 -- -- 0.0175 5.13 1.5 473 -- --
61.57 0.367 3.12 0.0564 -- -- -- -- 0.00899 -- -- -- -- --
60.56 0.364 3.12 -- 0.143 -- -- -- -0.00042 4.61 -- -- -- --
59.97 0.361 3.11 -- -- -0.617 -- -- 0.0207 -- 1.306 473 -- --
61.65 0.366 3.12 -- -- -- -- -- 0.00273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.47 wind 9.0 30 < th dose independent rect. 3 23
3 55.64 radiation 1.0 43200 < th dose dependent rect. 3 1
4 55.78 temperature 15.0 30 > th dose independent rect. 3 23
5 55.78 temperature 10.0 30 > th dose dependent rect. 3 23
6 55.88 radiation 1.0 4320 < th dose dependent rect. 3 1
8 55.89 temperature 25.0 90 > th dose dependent rect. 2 1
9 55.91 temperature 25.0 90 > th dose independent rect. 2 1
12 55.94 precipitation 0.1 30 < th dose independent rect. 3 23
14 55.94 precipitation 0.1 30 < th dose dependent rect. 3 23
15 55.95 atmosphere 1005.0 30 > th dose dependent rect. 2 1
20 55.96 wind 9.0 1440 < th dose independent rect. 3 1
21 55.96 temperature 10.0 1440 > th dose independent rect. 3 1
24 55.96 temperature 30.0 1440 < th dose independent rect. 3 1
28 55.96 humidity 50.0 1440 > th dose independent rect. 3 1
37 55.96 atmosphere 995.0 1440 > th dose independent rect. 3 1
38 55.96 radiation 1.0 1440 < th dose independent rect. 3 1
59 55.96 temperature 10.0 1440 > th dose independent rect. 4 23
71 55.97 wind 3.0 30 < th dose dependent rect. 2 1
73 55.99 wind 1.0 30 < th dose independent rect. 2 1
76 56.00 atmosphere 995.0 30 > th dose independent rect. 3 23
79 56.01 atmosphere 1005.0 30 > th dose independent rect. 2 1
92 56.04 humidity 90.0 30 > th dose independent rect. 2 1
94 56.05 humidity 60.0 30 > th dose dependent rect. 2 1
98 56.06 temperature 10.0 30 > th dose independent rect. 2 1
100 56.06 temperature 30.0 30 < th dose independent rect. 2 1
101 56.06 humidity 50.0 30 > th dose independent rect. 2 1
104 56.06 atmosphere 995.0 30 > th dose independent rect. 2 1
105 56.06 atmosphere 1010.0 30 < th dose independent rect. 2 1
107 56.06 radiation 1.0 30 < th dose independent rect. 2 1
112 56.06 precipitation 0.1 30 < th dose independent rect. 2 1
115 56.06 radiation 1.0 30 < th dose dependent rect. 2 1
120 56.06 precipitation 0.1 30 < th dose dependent rect. 2 1
126 56.11 atmosphere 1015.0 720 < th dose independent rect. 3 8
128 56.12 atmosphere 1015.0 30 < th dose dependent rect. 2 1
130 56.16 temperature 30.0 30 < th dose dependent rect. 2 1
139 56.23 wind 1.0 30 > th dose independent rect. 2 1
146 56.29 precipitation 0.1 720 < th dose independent rect. 23 16
147 56.29 precipitation 0.1 720 < th dose dependent rect. 23 16
159 56.36 humidity 50.0 720 > th dose independent rect. 23 16
186 56.42 humidity 70.0 4320 < th dose dependent rect. 19 1
187 56.47 radiation 20.0 30 < th dose dependent rect. 3 23
205 56.65 humidity 50.0 1440 > th dose independent rect. 16 11
209 56.70 temperature 15.0 720 > th dose independent rect. 7 8
212 56.71 humidity 50.0 1440 > th dose independent rect. 16 17
214 56.73 humidity 50.0 1440 > th dose independent rect. 16 5
217 56.73 humidity 60.0 1440 > th dose independent rect. 18 7
222 56.74 humidity 50.0 1440 > th dose independent rect. 16 15
224 56.75 humidity 50.0 1440 > th dose independent rect. 16 3
230 56.75 humidity 60.0 4320 < th dose dependent rect. 17 3
246 56.77 humidity 60.0 1440 < th dose independent rect. 18 1
247 56.77 humidity 60.0 1440 > th dose independent rect. 18 2
248 56.77 humidity 50.0 1440 < th dose independent rect. 16 2
287 56.78 precipitation 0.1 720 < th dose independent rect. 3 8
302 56.78 precipitation 0.1 720 < th dose dependent rect. 3 8
393 56.86 atmosphere 1010.0 30 < th dose independent rect. 3 23
439 56.93 wind 1.0 10 > th dose independent rect. 24 11
441 56.95 temperature 15.0 720 > th dose independent rect. 3 16
455 56.96 precipitation 0.1 720 < th dose independent rect. 3 16
456 56.96 precipitation 0.1 720 < th dose dependent rect. 3 16
457 56.98 temperature 15.0 720 > th dose independent rect. 3 8
458 57.01 wind 9.0 720 < th dose independent rect. 3 8
489 57.06 wind 3.0 10 < th dose dependent rect. 22 5
495 57.10 wind 7.0 90 < th dose independent rect. 3 16
498 57.12 radiation 10.0 30 < th dose independent rect. 3 23
518 57.16 wind 5.0 10 < th dose dependent rect. 20 7
520 57.16 temperature 10.0 90 > th dose dependent rect. 3 18
585 57.21 radiation 40.0 30 < th dose dependent rect. 3 8
612 57.22 humidity 50.0 30 > th dose independent rect. 3 23
613 57.22 humidity 50.0 30 > th dose dependent rect. 11 16
634 57.24 temperature 15.0 1440 > th dose independent rect. 7 21
636 57.25 atmosphere 1015.0 30 < th dose independent rect. 11 16
638 57.26 wind 7.0 90 < th dose independent rect. 3 18
639 57.26 humidity 80.0 30 > th dose dependent rect. 11 16
643 57.27 atmosphere 995.0 30 > th dose dependent rect. 11 16
650 57.30 atmosphere 1015.0 1440 < th dose independent rect. 3 1
659 57.32 temperature 15.0 1440 > th dose independent rect. 12 16
660 57.32 atmosphere 1015.0 720 < th dose independent rect. 3 16
669 57.33 humidity 90.0 14400 > th dose dependent rect. 20 7
682 57.36 atmosphere 1000.0 30 > th dose independent rect. 3 8
683 57.36 atmosphere 1010.0 30 < th dose independent rect. 3 8
689 57.37 humidity 90.0 14400 > th dose dependent rect. 22 4
710 57.39 wind 9.0 30 < th dose independent rect. 3 8
711 57.39 temperature 10.0 30 > th dose independent rect. 3 8
713 57.39 humidity 50.0 30 > th dose independent rect. 3 8
716 57.39 temperature 10.0 30 > th dose independent rect. 11 16
728 57.40 radiation 30.0 10 < th dose independent rect. 3 8
736 57.40 wind 1.0 10 > th dose dependent rect. 11 1
743 57.41 humidity 50.0 720 > th dose independent rect. 3 8
746 57.41 temperature 15.0 90 > th dose independent rect. 3 18
751 57.42 temperature 15.0 720 > th dose independent rect. 23 16
772 57.43 humidity 50.0 720 > th dose independent rect. 7 8
776 57.43 temperature 15.0 90 > th dose independent rect. 23 23
779 57.43 humidity 50.0 30 > th dose dependent rect. 3 8
780 57.43 wind 3.0 10 < th dose dependent rect. 17 10
783 57.43 precipitation 0.1 720 > th dose dependent rect. 5 12
785 57.44 precipitation 0.1 30 < th dose independent rect. 3 8
789 57.44 precipitation 0.1 720 > th dose dependent rect. 6 8
790 57.44 precipitation 0.1 30 < th dose dependent rect. 3 8
794 57.44 temperature 30.0 90 < th dose dependent rect. 10 17
799 57.45 atmosphere 1015.0 30 < th dose independent rect. 11 13
800 57.45 temperature 15.0 90 > th dose independent rect. 3 16
801 57.45 humidity 90.0 30 > th dose independent rect. 11 16
826 57.47 temperature 15.0 1440 > th dose independent rect. 23 5
833 57.48 precipitation 0.1 720 > th dose independent rect. 5 12
839 57.49 temperature 15.0 1440 > th dose independent rect. 7 18
848 57.50 humidity 90.0 14400 > th dose dependent sin 11 NA
861 57.51 atmosphere 1010.0 90 < th dose independent rect. 3 18
863 57.51 humidity 90.0 1440 > th dose dependent rect. 6 6
909 57.55 precipitation 0.1 10 < th dose independent rect. 11 16
911 57.55 humidity 80.0 30 > th dose dependent rect. 22 5
918 57.55 precipitation 0.1 10 < th dose dependent rect. 11 16
926 57.56 precipitation 0.1 720 > th dose independent rect. 5 22
937 57.56 wind 9.0 30 < th dose dependent rect. 3 8
946 57.56 temperature 30.0 90 < th dose dependent rect. 10 14
950 57.56 wind 9.0 30 < th dose dependent rect. 3 23
957 57.57 temperature 15.0 1440 > th dose independent rect. 7 6
968 57.57 atmosphere 995.0 720 > th dose independent rect. 3 8