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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0420000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0125) R2 : 8.57e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0052 (0.0263) R2dN8 : 0.000111 R2N8 : 8.57e-05
σ : 0.235
deviance : 25.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.53 0.228 3.07 0.108 0.124 0.151 0.00817 0.648 -0.0219 7.59 91.08 5914 -- --
24.07 0.228 3.07 0.0597 0.142 0.179 -0.0228 -- -0.0426 7.3 97.1 4817 -- --
23.53 0.226 3.07 0.108 0.124 0.151 -- 0.648 -0.0218 7.58 91 5914 -- --
24.07 0.228 3.07 0.0629 0.144 0.184 -- -- -0.0442 7.36 102.2 4820 -- --
24.35 0.23 3.08 0.106 -- 0.155 -- 0.636 -0.0215 -- 91 5849 -- --
24.51 0.232 3.06 0.0523 0.122 -- -0.000111 -- -0.00109 7.56 -- -- -- --
24.51 0.232 3.06 0.0523 0.122 -- -- -- -0.00108 7.56 -- -- -- --
24.91 0.232 3.07 0.0757 -- 0.164 -- -- -0.0355 -- 96.96 7210 -- --
24.17 0.229 3.07 -- 0.144 0.177 -- -- -0.0495 7.33 119.1 4820 -- --
25.31 0.235 3.07 0.054 -- -- -- -- 0.000797 -- -- -- -- --
24.58 0.232 3.06 -- 0.123 -- -- -- -0.0069 7.53 -- -- -- --
25.03 0.233 3.08 -- -- 0.16 -- -- -0.0418 -- 123.7 5744 -- --
25.38 0.235 3.07 -- -- -- -- -- -0.0052 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.20 atmosphere 1005.0 10 > th dose dependent rect. 2 2
4 22.40 atmosphere 1000.0 30 > th dose independent rect. 3 23
10 22.72 radiation 1.0 43200 < th dose dependent rect. 3 1
11 22.74 temperature 25.0 90 > th dose independent rect. 1 1
14 22.76 radiation 1.0 4320 < th dose dependent rect. 3 1
16 22.77 temperature 25.0 90 > th dose dependent rect. 1 2
24 22.79 wind 9.0 1440 < th dose independent rect. 3 1
25 22.79 temperature 10.0 1440 > th dose independent rect. 3 1
28 22.79 temperature 30.0 1440 < th dose independent rect. 3 1
32 22.79 humidity 50.0 1440 > th dose independent rect. 3 1
41 22.79 atmosphere 1005.0 90 > th dose independent rect. 2 1
42 22.79 atmosphere 995.0 1440 > th dose independent rect. 3 1
43 22.79 radiation 1.0 1440 < th dose independent rect. 3 1
64 22.79 temperature 10.0 1440 > th dose independent rect. 4 23
87 22.83 humidity 90.0 90 < th dose independent rect. 2 1
91 22.84 wind 3.0 30 < th dose independent rect. 2 1
97 22.84 atmosphere 995.0 720 > th dose independent rect. 23 16
98 22.84 wind 5.0 30 < th dose dependent rect. 2 1
104 22.85 temperature 10.0 30 > th dose independent rect. 2 1
106 22.85 temperature 25.0 30 < th dose independent rect. 2 1
108 22.85 humidity 50.0 30 > th dose independent rect. 2 1
114 22.85 atmosphere 1010.0 30 < th dose independent rect. 2 1
116 22.85 radiation 1.0 30 < th dose independent rect. 2 1
121 22.85 precipitation 0.1 30 < th dose independent rect. 2 1
122 22.85 temperature 10.0 30 > th dose independent rect. 3 23
124 22.85 humidity 50.0 30 > th dose dependent rect. 2 1
128 22.85 radiation 1.0 30 < th dose dependent rect. 2 1
133 22.85 precipitation 0.1 30 < th dose dependent rect. 2 1
135 22.86 atmosphere 1015.0 30 < th dose dependent rect. 2 1
137 22.87 wind 1.0 30 > th dose independent rect. 2 1
140 22.88 temperature 30.0 30 < th dose dependent rect. 2 1
148 22.91 precipitation 0.1 30 < th dose independent rect. 3 23
150 22.91 precipitation 0.1 30 < th dose dependent rect. 3 23
200 22.97 atmosphere 995.0 720 > th dose independent rect. 7 8
236 23.09 humidity 50.0 30 > th dose independent rect. 3 23
240 23.13 humidity 90.0 90 < th dose independent rect. 1 6
241 23.13 wind 9.0 30 < th dose independent rect. 3 23
246 23.16 humidity 80.0 14400 < th dose dependent rect. 2 7
249 23.17 humidity 90.0 90 < th dose dependent rect. 2 1
251 23.18 temperature 10.0 720 > th dose independent rect. 15 8
252 23.18 temperature 10.0 720 > th dose independent rect. 23 16
260 23.20 precipitation 0.1 720 < th dose independent rect. 15 16
262 23.20 precipitation 0.1 720 < th dose dependent rect. 15 16
263 23.21 wind 9.0 720 < th dose independent rect. 19 8
269 23.23 temperature 10.0 720 > th dose independent rect. 7 8
270 23.23 atmosphere 1015.0 720 < th dose independent rect. 7 8
271 23.23 precipitation 0.1 720 < th dose independent rect. 15 8
272 23.23 temperature 10.0 720 > th dose independent rect. 15 16
273 23.23 precipitation 0.1 720 < th dose dependent rect. 15 8
275 23.24 temperature 10.0 720 > th dose independent rect. 3 8
276 23.24 atmosphere 995.0 720 > th dose independent rect. 3 8
277 23.24 temperature 10.0 720 > th dose independent rect. 11 16
280 23.25 temperature 10.0 720 > th dose independent rect. 19 8
281 23.25 temperature 30.0 720 < th dose independent rect. 19 8
282 23.25 humidity 50.0 720 > th dose independent rect. 19 8
283 23.25 atmosphere 995.0 720 > th dose independent rect. 19 8
284 23.25 radiation 1.0 720 < th dose independent rect. 19 8
289 23.25 temperature 10.0 720 > th dose independent rect. 3 16
291 23.25 humidity 90.0 90 < th dose dependent rect. 2 5
292 23.25 radiation 1.0 720 < th dose dependent rect. 19 8
302 23.28 precipitation 0.1 720 < th dose independent rect. 19 8
306 23.28 precipitation 0.1 720 < th dose dependent rect. 19 8
312 23.30 radiation 40.0 720 < th dose independent rect. 15 16
319 23.32 wind 1.0 1440 < th dose dependent rect. 20 2
320 23.33 humidity 90.0 720 > th dose independent rect. 3 1
321 23.34 wind 9.0 720 < th dose independent rect. 3 8
331 23.35 precipitation 0.1 720 < th dose independent rect. 11 16
334 23.35 precipitation 0.1 720 < th dose dependent rect. 11 16
340 23.36 radiation 40.0 720 < th dose independent rect. 15 8
342 23.36 humidity 90.0 10 < th dose dependent rect. 3 1
351 23.36 atmosphere 995.0 10 > th dose dependent rect. 4 22
355 23.37 humidity 50.0 720 > th dose independent rect. 3 8
376 23.41 wind 9.0 720 < th dose independent rect. 15 16
388 23.43 humidity 80.0 4320 > th dose independent rect. 7 4
392 23.44 humidity 70.0 4320 > th dose dependent rect. 7 1
393 23.44 humidity 80.0 90 < th dose dependent rect. 24 3
398 23.45 humidity 80.0 4320 < th dose independent rect. 7 4
402 23.45 atmosphere 1015.0 720 < th dose independent rect. 3 16
409 23.45 wind 9.0 30 < th dose dependent rect. 3 23
442 23.46 atmosphere 995.0 720 > th dose independent rect. 3 16
469 23.47 humidity 50.0 4320 > th dose dependent rect. 7 1
476 23.47 humidity 70.0 4320 > th dose dependent rect. 6 3
478 23.48 wind 1.0 1440 < th dose independent rect. 21 1
485 23.48 temperature 10.0 720 > th dose dependent rect. 2 1
490 23.49 humidity 70.0 14400 < th dose independent rect. 8 2
497 23.49 atmosphere 1000.0 10 > th dose independent rect. 14 12
522 23.50 precipitation 0.1 720 < th dose independent rect. 1 16
523 23.50 humidity 90.0 90 < th dose independent rect. 1 20
524 23.50 atmosphere 995.0 720 > th dose independent rect. 3 23
527 23.50 precipitation 0.1 720 < th dose dependent rect. 1 16
532 23.51 atmosphere 995.0 720 > th dose independent rect. 15 23
538 23.52 wind 9.0 720 < th dose independent rect. 15 8
557 23.53 precipitation 0.1 720 < th dose independent rect. 5 8
571 23.53 precipitation 0.1 720 < th dose dependent rect. 5 8
575 23.54 precipitation 0.1 720 < th dose independent rect. 7 8
581 23.54 precipitation 0.1 720 < th dose dependent rect. 7 8
607 23.55 humidity 60.0 10 > th dose independent rect. 14 12
661 23.57 radiation 40.0 30 < th dose independent rect. 14 12
677 23.58 temperature 10.0 720 > th dose independent rect. 17 8
679 23.58 radiation 30.0 720 < th dose independent rect. 17 8
682 23.58 temperature 10.0 720 > th dose independent rect. 1 16
700 23.59 atmosphere 1015.0 720 < th dose independent rect. 3 8
703 23.59 atmosphere 995.0 720 > th dose independent rect. 15 16
705 23.59 temperature 30.0 30 < th dose independent rect. 3 23
710 23.59 temperature 25.0 90 > th dose dependent rect. 1 5
717 23.59 radiation 10.0 10 < th dose dependent rect. 4 22
723 23.60 atmosphere 995.0 1440 > th dose independent rect. 3 12
726 23.60 wind 5.0 14400 < th dose dependent rect. 11 1
734 23.61 humidity 60.0 4320 > th dose independent rect. 11 1
736 23.61 humidity 50.0 4320 < th dose independent rect. 13 1
739 23.61 humidity 60.0 4320 < th dose independent rect. 11 2
744 23.61 atmosphere 1000.0 10 > th dose independent rect. 2 12
745 23.61 radiation 40.0 90 < th dose independent rect. 1 13
763 23.62 temperature 10.0 720 > th dose independent rect. 5 8
764 23.62 atmosphere 995.0 720 > th dose independent rect. 5 8
765 23.62 atmosphere 1015.0 720 < th dose independent rect. 5 8
769 23.62 temperature 10.0 720 > th dose independent rect. 13 16
770 23.62 atmosphere 1000.0 10 > th dose independent rect. 8 18
772 23.62 radiation 40.0 90 > th dose independent rect. 14 21
774 23.62 radiation 1.0 90 < th dose independent rect. 3 22
775 23.62 humidity 80.0 720 > th dose dependent rect. 3 2
805 23.63 humidity 90.0 90 < th dose independent rect. 1 16
830 23.64 humidity 70.0 4320 < th dose independent rect. 14 1
831 23.64 atmosphere 995.0 720 > th dose independent rect. 14 1
832 23.64 wind 3.0 14400 > th dose independent rect. 10 2
842 23.64 humidity 50.0 720 > th dose independent rect. 5 8
847 23.64 wind 9.0 10 < th dose independent rect. 2 12
848 23.64 humidity 80.0 14400 < th dose dependent sin 8 NA
857 23.64 wind 3.0 30 < th dose dependent rect. 2 6
863 23.65 wind 3.0 14400 > th dose independent rect. 19 1
871 23.65 temperature 30.0 4320 < th dose independent rect. 3 6
918 23.66 radiation 1.0 720 > th dose independent rect. 14 1
921 23.66 humidity 90.0 720 < th dose independent rect. 1 3
993 23.67 humidity 70.0 4320 > th dose independent sin 2 NA
998 23.67 humidity 70.0 4320 > th dose independent rect. 14 1