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Os08g0540300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0151) R2 : 0.334
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.48 (0.0317) R2dN8 : 0.431 R2N8 : 0.334
σ : 0.284
deviance : 37.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.87 0.199 13.6 0.425 0.453 0.27 -0.026 0.0571 0.479 0.608 20.5 17 -- --
17.88 0.197 13.6 0.413 0.452 0.267 -0.0521 -- 0.476 0.612 20.57 21 -- --
17.87 0.197 13.6 0.425 0.454 0.271 -- 0.0632 0.479 0.609 20.5 21 -- --
17.9 0.197 13.6 0.415 0.452 0.267 -- -- 0.477 0.605 20.57 21 -- --
27.13 0.243 13.6 0.368 -- 0.331 -- 0.0268 0.454 -- 20.98 919 -- --
20.93 0.214 13.6 0.482 0.389 -- -0.0671 -- 0.528 0.54 -- -- -- --
20.95 0.214 13.6 0.484 0.39 -- -- -- 0.528 0.531 -- -- -- --
26.87 0.241 13.6 0.374 -- 0.322 -- -- 0.444 -- 21.3 932 -- --
22.07 0.219 13.7 -- 0.476 0.344 -- -- 0.418 0.73 20.51 79 -- --
30.47 0.258 13.6 0.498 -- -- -- -- 0.535 -- -- -- -- --
27.13 0.244 13.6 -- 0.397 -- -- -- 0.474 0.592 -- -- -- --
30.07 0.255 13.7 -- -- 0.472 -- -- 0.368 -- 20.85 3823 -- --
37.01 0.284 13.6 -- -- -- -- -- 0.48 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.32 temperature 20 10 > th dose independent rect. 20 10
2 17.39 temperature 20 10 > th dose independent rect. 7 23
4 17.48 temperature 20 10 > th dose independent rect. 18 12
5 17.48 temperature 20 270 > th dose independent rect. 7 22
7 17.52 wind 5 4320 > th dose dependent sin 13 NA
9 17.57 wind 1 43200 > th dose independent rect. 4 2
13 17.61 radiation 1 14400 < th dose dependent rect. 21 4
18 17.69 temperature 20 10 > th dose independent sin 9 NA
23 17.71 radiation 1 14400 < th dose dependent rect. 19 6
24 17.71 wind 5 4320 > th dose dependent rect. 14 18
25 17.72 temperature 20 10 < th dose independent sin 9 NA
37 17.78 temperature 20 10 > th dose independent rect. 10 20
39 17.79 temperature 20 10 < th dose independent rect. 18 14
47 17.81 wind 7 4320 < th dose independent sin 13 NA
49 17.81 temperature 20 4320 > th dose independent rect. 18 4
50 17.81 temperature 20 270 > th dose independent rect. 18 11
51 17.82 wind 7 4320 > th dose independent sin 13 NA
52 17.82 temperature 20 4320 > th dose independent rect. 20 2
56 17.82 wind 5 4320 > th dose dependent rect. 17 12
61 17.83 temperature 20 10 < th dose independent rect. 19 17
78 17.86 temperature 20 4320 < th dose independent rect. 21 1
81 17.86 atmosphere 995 14400 < th dose independent rect. 4 11
82 17.86 wind 5 4320 > th dose independent rect. 16 16
84 17.86 atmosphere 995 14400 < th dose dependent rect. 5 10
86 17.86 atmosphere 995 14400 < th dose dependent rect. 4 12
109 17.89 atmosphere 995 14400 > th dose independent rect. 3 12
112 17.89 atmosphere 995 14400 < th dose independent rect. 1 15
115 17.89 temperature 20 90 > th dose independent rect. 9 21
126 17.90 atmosphere 995 14400 > th dose independent rect. 23 17
129 17.90 wind 7 4320 < th dose independent rect. 14 19
141 17.91 wind 1 43200 < th dose independent rect. 4 3
149 17.91 wind 7 4320 < th dose independent rect. 14 16
165 17.92 atmosphere 1000 14400 < th dose dependent rect. 13 1
173 17.93 temperature 20 270 < th dose independent sin 12 NA
179 17.93 wind 7 4320 > th dose independent rect. 14 16
180 17.93 wind 5 4320 < th dose independent rect. 16 16
243 17.96 atmosphere 995 14400 > th dose independent sin 4 NA
245 17.96 temperature 20 270 < th dose independent rect. 19 10
270 17.97 temperature 20 270 < th dose independent rect. 7 22
272 17.97 atmosphere 995 14400 < th dose dependent sin 1 NA
273 17.97 wind 1 43200 < th dose dependent rect. 4 1
283 17.98 atmosphere 995 14400 < th dose independent sin 4 NA
284 17.98 atmosphere 995 14400 > th dose independent rect. 6 7
315 17.99 wind 7 4320 < th dose independent rect. 16 13
366 18.01 wind 1 43200 < th dose independent rect. 4 1
424 18.02 atmosphere 995 14400 < th dose dependent sin 19 NA
433 18.02 atmosphere 995 14400 < th dose dependent rect. 14 10
468 18.03 atmosphere 1000 14400 > th dose independent rect. 11 1
469 18.03 atmosphere 1000 14400 < th dose independent rect. 11 1
477 18.03 temperature 20 270 < th dose independent rect. 18 15
517 18.04 wind 7 14400 > th dose independent rect. 6 1
538 18.04 temperature 20 10 < th dose independent rect. 11 21
609 18.05 atmosphere 1000 14400 < th dose dependent rect. 8 1
630 18.06 atmosphere 1000 14400 > th dose independent rect. 5 1
631 18.06 atmosphere 1000 14400 < th dose independent rect. 4 2
643 18.06 atmosphere 995 14400 > th dose independent rect. 11 19
681 18.07 atmosphere 995 14400 > th dose independent no NA NA
691 18.07 atmosphere 1000 14400 < th dose independent rect. 4 8
703 18.07 atmosphere 995 14400 > th dose independent rect. 12 16
728 18.07 atmosphere 995 14400 > th dose independent rect. 1 22
751 18.07 atmosphere 995 14400 > th dose independent rect. 14 23
818 18.08 atmosphere 995 14400 > th dose independent rect. 14 16
886 18.09 temperature 20 10 > th dose independent no NA NA
888 18.09 atmosphere 995 14400 < th dose independent no NA NA
931 18.09 atmosphere 995 14400 > th dose independent rect. 14 14
932 18.09 atmosphere 995 14400 < th dose independent rect. 14 14