Os07g0621500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os07g0621500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.9 | 0.308 | 9.65 | 2.59 | 0.609 | -0.796 | -0.0671 | 2.15 | 0.327 | 17.2 | 21.3 | 1857 | -- | -- |
| 46.35 | 0.317 | 9.72 | 2.05 | 0.527 | -0.619 | 0.148 | -- | 0.248 | 17.2 | 22.4 | 7604 | -- | -- |
| 42.91 | 0.305 | 9.65 | 2.59 | 0.609 | -0.796 | -- | 2.14 | 0.326 | 17.2 | 21.27 | 1857 | -- | -- |
| 45.96 | 0.316 | 9.71 | 2.02 | 0.54 | -0.592 | -- | -- | 0.211 | 17 | 22.6 | 7513 | -- | -- |
| 57.35 | 0.353 | 9.65 | 2.56 | -- | -0.798 | -- | 1.84 | 0.303 | -- | 21.38 | 2679 | -- | -- |
| 58.75 | 0.359 | 9.76 | 1.74 | 0.546 | -- | -0.0181 | -- | 0.00503 | 16.8 | -- | -- | -- | -- |
| 58.75 | 0.359 | 9.76 | 1.74 | 0.546 | -- | -- | -- | 0.00493 | 16.8 | -- | -- | -- | -- |
| 59.73 | 0.36 | 9.71 | 2 | -- | -0.603 | -- | -- | 0.176 | -- | 22.93 | 7058 | -- | -- |
| 135.53 | 0.542 | 9.76 | -- | 0.532 | -0.187 | -- | -- | -0.117 | 16.8 | 33.79 | 7696 | -- | -- |
| 74.51 | 0.403 | 9.75 | 1.72 | -- | -- | -- | -- | -0.0092 | -- | -- | -- | -- | -- |
| 138.31 | 0.55 | 9.8 | -- | 0.515 | -- | -- | -- | -0.189 | 17 | -- | -- | -- | -- |
| 115.29 | 0.5 | 9.87 | -- | -- | 0.949 | -- | -- | -0.501 | -- | 15 | 47520 | -- | -- |
| 152.28 | 0.576 | 9.8 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 41.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 3 | 41.23 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 5 | 41.32 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 9 | 41.44 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 35 | 41.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 52 | 41.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 81 | 42.26 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 94 | 42.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 95 | 42.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 97 | 42.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 106 | 42.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 113 | 42.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 129 | 42.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 135 | 42.61 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 142 | 42.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 199 | 42.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 211 | 42.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 234 | 42.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 237 | 42.82 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 253 | 42.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 269 | 42.88 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 273 | 42.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 296 | 42.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 319 | 42.94 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 327 | 42.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 335 | 42.96 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 362 | 43.00 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 429 | 43.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 560 | 43.18 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 627 | 43.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 628 | 43.22 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 649 | 43.23 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 658 | 43.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 678 | 43.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 726 | 43.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 740 | 43.31 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 764 | 43.33 | humidity | 80 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 796 | 43.35 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 7 |
| 803 | 43.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 804 | 43.36 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 853 | 43.40 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 882 | 43.42 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 889 | 43.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 907 | 43.44 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 937 | 43.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 960 | 43.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 999 | 43.52 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 8 |