Os09g0559000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0559000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.59 | 0.505 | 3.31 | 0.578 | 0.302 | 1.1 | 0.72 | -0.79 | 0.168 | 11.8 | 29.8 | 345 | -- | -- |
| 116.06 | 0.502 | 3.32 | 0.447 | 0.255 | 1.12 | 0.765 | -- | 0.142 | 12.1 | 29.2 | 403 | -- | -- |
| 117.73 | 0.505 | 3.3 | 0.609 | 0.298 | 1.05 | -- | -0.884 | 0.167 | 11.3 | 29.62 | 344 | -- | -- |
| 118.26 | 0.506 | 3.32 | 0.464 | 0.221 | 1.03 | -- | -- | 0.139 | 9.6 | 27.64 | 487 | -- | -- |
| 119.75 | 0.51 | 3.32 | 0.582 | -- | 1.17 | -- | -0.425 | 0.174 | -- | 29.54 | 601 | -- | -- |
| 132.88 | 0.54 | 3.36 | 0.178 | 0.419 | -- | 0.439 | -- | -0.0876 | 8.66 | -- | -- | -- | -- |
| 133.36 | 0.541 | 3.36 | 0.19 | 0.426 | -- | -- | -- | -0.0889 | 8.21 | -- | -- | -- | -- |
| 119.92 | 0.51 | 3.32 | 0.506 | -- | 1.17 | -- | -- | 0.155 | -- | 29.3 | 602 | -- | -- |
| 123.35 | 0.517 | 3.33 | -- | 0.268 | 0.865 | -- | -- | 0.0787 | 7.77 | 24.89 | 608 | -- | -- |
| 143.35 | 0.559 | 3.38 | 0.193 | -- | -- | -- | -- | -0.084 | -- | -- | -- | -- | -- |
| 134.31 | 0.542 | 3.37 | -- | 0.427 | -- | -- | -- | -0.11 | 8.18 | -- | -- | -- | -- |
| 125.91 | 0.523 | 3.34 | -- | -- | 0.99 | -- | -- | 0.0642 | -- | 29.53 | 577 | -- | -- |
| 144.33 | 0.561 | 3.38 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.69 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 3 | 109.34 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 11 | 111.94 | humidity | 90 | 90 | < th | dose independent | rect. | 2 | 2 |
| 12 | 112.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 21 | 112.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 15 |
| 22 | 112.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 23 | 112.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 27 | 112.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 35 | 112.90 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 53 | 113.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 57 | 113.31 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 100 | 113.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 185 | 114.63 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 2 | 1 |
| 259 | 115.27 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 296 | 115.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 309 | 115.53 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 319 | 115.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 333 | 115.70 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 4 |
| 404 | 116.00 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 414 | 116.03 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 486 | 116.27 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 496 | 116.29 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 524 | 116.38 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 540 | 116.43 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 543 | 116.44 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 564 | 116.51 | radiation | 10 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 567 | 116.53 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 1 |
| 568 | 116.53 | radiation | 1 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 584 | 116.58 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 2 | 2 |
| 594 | 116.60 | radiation | 10 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 599 | 116.61 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 622 | 116.64 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 623 | 116.64 | radiation | 10 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 630 | 116.65 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 631 | 116.65 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 632 | 116.65 | radiation | 10 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 651 | 116.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 653 | 116.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 679 | 116.74 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 8 |
| 689 | 116.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 696 | 116.77 | radiation | 10 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 726 | 116.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 813 | 116.98 | radiation | 30 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 824 | 117.00 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 940 | 117.20 | radiation | 30 | 4320 | < th | dose dependent | rect. | 2 | 5 |
| 991 | 117.28 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |