BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0482700 Os08g0482700|AK060044
(181 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0482700 Cupredoxin domain containing protein 150 7e-37
AK105053 150 7e-37
Os09g0469300 Cupredoxin domain containing protein 87 9e-18
Os02g0653200 Plastocyanin-like domain containing protein 81 5e-16
Os08g0137800 Cupredoxin domain containing protein 77 6e-15
Os06g0218600 Cupredoxin domain containing protein 76 1e-14
Os08g0482600 Plastocyanin-like domain containing protein 75 4e-14
Os08g0138200 Cupredoxin domain containing protein 74 7e-14
Os02g0758800 Cupredoxin domain containing protein 73 1e-13
Os07g0105000 Cupredoxin domain containing protein 73 1e-13
Os08g0137900 Similar to Chemocyanin precursor (Basic blue p... 70 8e-13
Os08g0138100 69 1e-12
Os04g0545600 Similar to Uclacyanin 3-like protein 68 4e-12
Os11g0428800 Plastocyanin-like domain containing protein 67 6e-12
Os08g0138400 Plastocyanin-like domain containing protein 65 2e-11
>Os08g0482700 Cupredoxin domain containing protein
Length = 181
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/88 (81%), Positives = 72/88 (81%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXXL 92
WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNC L
Sbjct: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNCAVASNSISSTSTSPATL 92
Query: 93 DLAAAGMHYYICTISGHCAGGMKLAINV 120
DLAAAGMHYYICTISGHCAGGMKLAINV
Sbjct: 93 DLAAAGMHYYICTISGHCAGGMKLAINV 120
>AK105053
Length = 181
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/88 (81%), Positives = 72/88 (81%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXXL 92
WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNC L
Sbjct: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNCAVASNSISSTSTSPATL 92
Query: 93 DLAAAGMHYYICTISGHCAGGMKLAINV 120
DLAAAGMHYYICTISGHCAGGMKLAINV
Sbjct: 93 DLAAAGMHYYICTISGHCAGGMKLAINV 120
>Os09g0469300 Cupredoxin domain containing protein
Length = 152
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSF-VGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
WT G NY+ WA+G+ F GD+LVF++ AHTVTEV++ ++D+C
Sbjct: 33 WTTGVNYNNWANGKFFRQGDELVFNYQARAHTVTEVSQTNFDSCNGNSPLSNDNGGSTT- 91
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ L+ GMHY+ICTI GHC+ GMKLA+NV
Sbjct: 92 IRLSYPGMHYFICTIPGHCSSGMKLAVNV 120
>Os02g0653200 Plastocyanin-like domain containing protein
Length = 202
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXXL 92
W+ G +YDTWA +TF+VGD LVF + HTV EV+ DY C +
Sbjct: 36 WSSGVDYDTWAKSKTFSVGDSLVFQYSMMHTVAEVSSADYSAC-SASNSIQSYSDQNTKI 94
Query: 93 DLAAAGMHYYICTISGHCAGGMKLAINV 120
L G Y+IC SGHC+GGMKLA+ V
Sbjct: 95 ALTKPGTRYFICGTSGHCSGGMKLAVTV 122
>Os08g0137800 Cupredoxin domain containing protein
Length = 190
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSF-VGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W L NYD W S F GD++VF + AH V EVNK DYD+C
Sbjct: 36 WDLRTNYDQWVSNINFRAGDQIVFKYSPAAHDVVEVNKADYDSCSSSSPIATFNSGDDT- 94
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ L A G Y+IC +GHC GGMK+A+ V
Sbjct: 95 IPLTATGTRYFICGFNGHCTGGMKVAVKV 123
>Os06g0218600 Cupredoxin domain containing protein
Length = 198
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVG-AHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W +G +Y TWAS + F +GD LVF++ G AH+V EV+ DY C
Sbjct: 33 WAMGADYTTWASDKKFKMGDTLVFNYAGGAHSVDEVSAADYAACTASNALQSDSSGTTT- 91
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ L AG HY+IC I+GHC+ GMKL ++V
Sbjct: 92 VTLKTAGKHYFICGIAGHCSNGMKLVVDV 120
>Os08g0482600 Plastocyanin-like domain containing protein
Length = 172
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFV-GAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W G +Y WA G+TF D LVF + HTVTEV K+DYD C
Sbjct: 37 WNTGVDYTAWAKGKTFEANDTLVFRYARKQHTVTEVTKSDYDACTVSGKPISDFEGGALV 96
Query: 92 LDLA-AAGMHYYICTISGHCAGGMKLAINV 120
+A + G HY+IC I HCA GMKLA+ V
Sbjct: 97 TFIALSPGEHYFICKIGNHCASGMKLAVTV 126
>Os08g0138200 Cupredoxin domain containing protein
Length = 190
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSF-VGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W NY WAS TF GD+LVF + AH V EV K YD C
Sbjct: 39 WDTRTNYAQWASAATFRAGDRLVFRYSPAAHDVVEVTKAGYDACSAASPIATFNSGDDT- 97
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ LAA G Y+IC GHCA GMKLA+ V
Sbjct: 98 VPLAAVGTRYFICGFPGHCAAGMKLAVKV 126
>Os02g0758800 Cupredoxin domain containing protein
Length = 246
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFV-GAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
WT+G +Y +WA ++F VGD LVF + GAHTV EV+ Y
Sbjct: 36 WTIGVDYTSWAGSKSFKVGDSLVFKYASGAHTVVEVSAAGYLA-CAAANALGSDSSGSTT 94
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ L G HY+ICTI+GHCAGGMK+ ++V
Sbjct: 95 VALKTPGKHYFICTIAGHCAGGMKMEVDV 123
>Os07g0105000 Cupredoxin domain containing protein
Length = 195
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXXL 92
W NY+ W+ Q F+ GD ++F++ +H V EV K YD C +
Sbjct: 36 WDTTGNYNAWSVSQKFSQGDSILFTYPSSHDVVEVPKASYDAC-SPANALASYTGGSTTV 94
Query: 93 DLAAAGMHYYICTISGHCAGGMKLAINV 120
L A G HY+IC + GHCA GMKL + V
Sbjct: 95 KLDAPGKHYFICGVPGHCAAGMKLEVTV 122
>Os08g0137900 Similar to Chemocyanin precursor (Basic blue protein)
(Plantacyanin)
Length = 188
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSF-VGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W NY W S TF VGD+LVF + AH V EVNK DYD+C
Sbjct: 34 WDTRTNYAQWVSAITFRVGDQLVFKYSPAAHDVVEVNKADYDSCSSSSPISTFNSGDDT- 92
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ LAA G Y+IC GHC GMK+A+ V
Sbjct: 93 IPLAAIGTRYFICGFPGHCTAGMKVAVKV 121
>Os08g0138100
Length = 195
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSF-VGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W NY W S TF VGD+LVF + AH V EV K YD+C
Sbjct: 38 WDTRTNYAQWVSAVTFRVGDQLVFKYSPAAHDVVEVTKAGYDSCSSSGPVATFNSGDDT- 96
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ L A G Y++C GHCA GMK+A+ V
Sbjct: 97 VPLTATGTRYFMCGFPGHCAAGMKIAVKV 125
>Os04g0545600 Similar to Uclacyanin 3-like protein
Length = 191
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSFVGA-HTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
WT G +Y WA G+TF +GD L+F + A H+V EV++ D+ +C
Sbjct: 44 WTTGVDYTAWARGKTFNIGDTLLFQYTSAGHSVVEVSEADHTSC-SAANPLRSYKDGTTI 102
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAINV 120
+ L +G Y+IC +GHC GMKL + V
Sbjct: 103 VTLTRSGTRYFICGSTGHCGAGMKLTVTV 131
>Os11g0428800 Plastocyanin-like domain containing protein
Length = 124
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSF-VGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W ++D+WA G+ FA GD LVF++ GAH V V+ Y +C
Sbjct: 35 WDFSVSFDSWADGKVFAAGDTLVFNYKPGAHNVLAVDAATYRSCKVGSSADSVAAATGTA 94
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAI 118
L G++YYIC + GHCA GMKL +
Sbjct: 95 SFLLKKGVNYYICGVPGHCAAGMKLRV 121
>Os08g0138400 Plastocyanin-like domain containing protein
Length = 190
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 33 WTLGQNYDTWASGQTFAVGDKLVFSF-VGAHTVTEVNKNDYDNCXXXXXXXXXXXXXXXX 91
W L NY +WAS TF + DKLVF + AH V EV K+ Y +C
Sbjct: 31 WDLQTNYTSWASSITFRLDDKLVFKYSAAAHDVVEVTKDGYLSC-SASSPIAVHRTGEDA 89
Query: 92 LDLAAAGMHYYICTISGHCAGGMKLAIN 119
++L G Y+IC + GHC GMKL +
Sbjct: 90 VELGRLGRRYFICGVPGHCDAGMKLEVR 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,497,461
Number of extensions: 61324
Number of successful extensions: 267
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 17
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 153 (63.5 bits)