Os08g0482700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os08g0482700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 410.85 | 0.952 | 9.47 | -1.49 | 0.685 | -3.87 | -1.33 | 4.79 | 0.283 | 5.68 | 25.01 | 1321 | -- | -- |
| 421.6 | 0.956 | 9.67 | -2.65 | 0.656 | -3.38 | -0.88 | -- | -0.0215 | 5.49 | 25.2 | 1320 | -- | -- |
| 415.03 | 0.949 | 9.47 | -1.53 | 0.683 | -3.9 | -- | 4.72 | 0.277 | 5.4 | 25.04 | 1307 | -- | -- |
| 422.94 | 0.958 | 9.62 | -2.78 | 0.689 | -3.41 | -- | -- | -0.0298 | 5.58 | 24.99 | 1320 | -- | -- |
| 438.34 | 0.975 | 9.47 | -1.39 | -- | -3.79 | -- | 5.18 | 0.292 | -- | 25.21 | 1340 | -- | -- |
| 863.04 | 1.38 | 9.72 | -3.87 | 0.559 | -- | -1.18 | -- | -0.443 | 7.75 | -- | -- | -- | -- |
| 865.83 | 1.38 | 9.71 | -3.9 | 0.565 | -- | -- | -- | -0.438 | 8.7 | -- | -- | -- | -- |
| 446.3 | 0.984 | 9.64 | -2.77 | -- | -3.24 | -- | -- | -0.0317 | -- | 25.07 | 1387 | -- | -- |
| 610.31 | 1.15 | 9.57 | -- | 0.588 | -4.06 | -- | -- | 0.4 | 6.19 | 24.36 | 1373 | -- | -- |
| 883.9 | 1.39 | 9.73 | -3.9 | -- | -- | -- | -- | -0.433 | -- | -- | -- | -- | -- |
| 1266.03 | 1.66 | 9.62 | -- | 0.559 | -- | -- | -- | -0.00391 | 9.22 | -- | -- | -- | -- |
| 529.69 | 1.07 | 9.38 | -- | -- | -4.56 | -- | -- | 1.1 | -- | 19.66 | 6650 | -- | -- |
| 1284.18 | 1.67 | 9.63 | -- | -- | -- | -- | -- | -0.00102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 411.99 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 2 | 412.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 3 | 416.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 6 | 416.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 16 |
| 8 | 417.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 20 |
| 29 | 417.47 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 40 | 417.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 48 | 417.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 55 | 417.94 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 81 | 418.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 153 | 420.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 191 | 421.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 10 |
| 210 | 422.48 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 277 | 425.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 359 | 429.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 361 | 429.60 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 395 | 431.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 408 | 432.14 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 415 | 432.39 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 472 | 434.97 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 516 | 436.82 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 531 | 437.58 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 651 | 440.25 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 21 |
| 689 | 440.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 739 | 441.56 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 20 |
| 759 | 441.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 762 | 441.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 812 | 442.37 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 848 | 442.93 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 851 | 442.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 891 | 443.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 892 | 443.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 896 | 443.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 18 |
| 899 | 443.72 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 900 | 443.73 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 929 | 444.24 | temperature | 20 | 14400 | > th | dose dependent | rect. | 3 | 2 |
| 949 | 444.76 | temperature | 25 | 14400 | < th | dose independent | sin | 12 | NA |
| 984 | 445.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 995 | 445.68 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |