Os11g0428800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastocyanin-like domain containing protein.
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Os11g0428800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plastocyanin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.48 | 0.663 | 6.76 | 0.061 | 0.844 | 0.742 | 0.0408 | 5.08 | -0.918 | 11.9 | 10 | 4355 | -- | -- |
| 229.22 | 0.711 | 6.9 | 0.225 | 0.595 | -0.272 | 0.137 | -- | -1.06 | 11.9 | 10 | 4355 | -- | -- |
| 202.52 | 0.663 | 6.76 | 0.061 | 0.844 | 0.745 | -- | 5.08 | -0.918 | 11.9 | 9.99 | 4353 | -- | -- |
| 229.28 | 0.71 | 6.9 | 0.179 | 0.699 | -0.246 | -- | -- | -1.08 | 11.9 | 20.17 | 47520 | -- | -- |
| 236.14 | 0.72 | 6.9 | 0.268 | -- | -0.657 | -- | 0.201 | -1.03 | -- | 9.986 | 4080 | -- | -- |
| 231.63 | 0.713 | 6.9 | 0.207 | 0.881 | -- | 0.148 | -- | -1.08 | 12 | -- | -- | -- | -- |
| 231.72 | 0.713 | 6.9 | 0.213 | 0.88 | -- | -- | -- | -1.08 | 12 | -- | -- | -- | -- |
| 236.4 | 0.719 | 6.9 | 0.251 | -- | -0.656 | -- | -- | -1.03 | -- | 9.986 | 4080 | -- | -- |
| 230.11 | 0.71 | 6.91 | -- | 0.685 | -0.262 | -- | -- | -1.1 | 11.9 | 20.17 | 47520 | -- | -- |
| 280.5 | 0.783 | 6.92 | 0.185 | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
| 232.91 | 0.714 | 6.9 | -- | 0.877 | -- | -- | -- | -1.1 | 12 | -- | -- | -- | -- |
| 236.11 | 0.718 | 6.93 | -- | -- | -0.636 | -- | -- | -1.14 | -- | 2.22 | 4017 | -- | -- |
| 281.41 | 0.783 | 6.92 | -- | -- | -- | -- | -- | -1.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.24 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 3 | 199.27 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 2 | 13 |
| 46 | 201.20 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 47 | 201.52 | radiation | 10.0 | 4320 | < th | dose independent | sin | 2 | NA |
| 48 | 201.58 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 11 | 22 |
| 103 | 202.58 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 5 | 22 |
| 109 | 202.59 | radiation | 10.0 | 4320 | < th | dose independent | no | NA | NA |
| 240 | 204.90 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 11 | 9 |
| 241 | 204.90 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 11 | 14 |
| 285 | 205.55 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 319 | 206.14 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 343 | 206.69 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 12 | 4 |
| 347 | 207.11 | wind | 1.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 349 | 207.32 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 350 | 207.32 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 356 | 207.65 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 357 | 207.65 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 359 | 207.94 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 360 | 207.97 | wind | 5.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 361 | 207.97 | wind | 5.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 364 | 208.04 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 365 | 208.04 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 11 | 20 |
| 410 | 208.24 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 425 | 208.33 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 431 | 208.57 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 435 | 208.70 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 464 | 209.24 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 465 | 209.27 | temperature | 25.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 467 | 209.29 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 13 | 4 |
| 476 | 209.43 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 479 | 209.59 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 480 | 209.60 | wind | 7.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 481 | 209.60 | wind | 7.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 487 | 209.69 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 492 | 209.71 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 494 | 209.71 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 497 | 209.72 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 500 | 209.80 | radiation | 10.0 | 4320 | > th | dose independent | sin | 16 | NA |
| 533 | 209.99 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 535 | 210.03 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 542 | 210.13 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 543 | 210.13 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 545 | 210.14 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 559 | 210.47 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 13 |
| 562 | 210.47 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 22 | 17 |
| 563 | 210.47 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 19 | 20 |
| 564 | 210.48 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 565 | 210.48 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 11 |
| 605 | 210.85 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 617 | 211.05 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 619 | 211.05 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 631 | 211.16 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 632 | 211.16 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 634 | 211.19 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 635 | 211.19 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 639 | 211.21 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 642 | 211.27 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 7 |
| 674 | 211.35 | wind | 9.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 676 | 211.36 | wind | 1.0 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 702 | 211.60 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 5 |
| 703 | 211.60 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 711 | 211.63 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 756 | 211.80 | radiation | 10.0 | 4320 | > th | dose independent | rect. | 5 | 11 |
| 768 | 211.80 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 11 | 20 |
| 772 | 211.83 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 10 | 23 |
| 781 | 211.89 | radiation | 20.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 820 | 212.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 828 | 212.07 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 11 | 9 |
| 840 | 212.09 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 855 | 212.12 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 930 | 212.33 | wind | 9.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 947 | 212.39 | wind | 7.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 949 | 212.39 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 953 | 212.41 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 955 | 212.42 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 958 | 212.43 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 982 | 212.50 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 991 | 212.54 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |