BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0434500 Os08g0434500|J090014M07
(77 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0434500 Conserved hypothetical protein 157 1e-39
Os07g0630900 Conserved hypothetical protein 94 2e-20
Os03g0377700 Cellulose synthase-like A5 94 3e-20
Os02g0192500 Similar to Cellulose synthase-like protein (Fr... 93 4e-20
Os06g0230100 Glycosyl transferase, family 2 domain containi... 90 3e-19
Os06g0625700 Conserved hypothetical protein 90 4e-19
Os09g0572500 Similar to Beta-1,4-mannan synthase 88 1e-18
Os03g0770800 CSLC9 87 2e-18
Os08g0253800 Glycosyl transferase, family 2 domain containi... 87 3e-18
Os07g0124750 86 7e-18
Os09g0428000 Glycosyl transferase, family 2 domain containi... 85 1e-17
Os03g0169500 Similar to Cellulose synthase-like A4 81 2e-16
Os10g0406400 Conserved hypothetical protein 75 1e-14
>Os08g0434500 Conserved hypothetical protein
Length = 77
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 VTQTSRFAHYLVTVGLKKQCFHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQG 60
VTQTSRFAHYLVTVGLKKQCFHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQG
Sbjct: 1 VTQTSRFAHYLVTVGLKKQCFHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQG 60
Query: 61 WKFVYVGDVKVCLCSFT 77
WKFVYVGDVKVCLCSFT
Sbjct: 61 WKFVYVGDVKVCLCSFT 77
>Os07g0630900 Conserved hypothetical protein
Length = 320
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/51 (76%), Positives = 46/51 (90%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWR AI++AGGWKDRTTVEDMDLAVRA+L GWKF+YVGD++V
Sbjct: 48 FSFNGTAGVWRTTAINEAGGWKDRTTVEDMDLAVRASLNGWKFIYVGDIRV 98
>Os03g0377700 Cellulose synthase-like A5
Length = 574
Score = 93.6 bits (231), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/51 (78%), Positives = 47/51 (92%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWR AI+DAGGWKDRTTVEDMDLAVRATL+GWKF+Y+GD++V
Sbjct: 298 FSFNGTAGVWRTEAINDAGGWKDRTTVEDMDLAVRATLKGWKFIYLGDLRV 348
>Os02g0192500 Similar to Cellulose synthase-like protein (Fragment)
Length = 521
Score = 93.2 bits (230), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 49/51 (96%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWR++A+++AGGWKDRTTVEDMDLA+RA+L+GWKFVY+GDV+V
Sbjct: 248 FGFNGTAGVWRVSAVNEAGGWKDRTTVEDMDLAIRASLKGWKFVYLGDVQV 298
>Os06g0230100 Glycosyl transferase, family 2 domain containing protein
Length = 506
Score = 90.1 bits (222), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/47 (82%), Positives = 45/47 (95%)
Query: 25 GTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
GTAGVWRI+A+++AGGWKDRTTVEDMDLAVRA L+GWKFVY+ DVKV
Sbjct: 306 GTAGVWRISALEEAGGWKDRTTVEDMDLAVRAGLKGWKFVYLADVKV 352
>Os06g0625700 Conserved hypothetical protein
Length = 213
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 47/51 (92%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWRI+A+++AGGWKDRTTVEDMDLAVRA L+GWKFVY+GD+ V
Sbjct: 15 FGFNGTAGVWRISAMNEAGGWKDRTTVEDMDLAVRAGLKGWKFVYLGDLMV 65
>Os09g0572500 Similar to Beta-1,4-mannan synthase
Length = 541
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 40/66 (60%), Positives = 51/66 (77%), Gaps = 3/66 (4%)
Query: 9 HYLVTVGLKKQC---FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVY 65
H+ V + C F +GTAGVWR+ A+++AGGWK+RTTVEDMDLAVRA+L+GW+FVY
Sbjct: 234 HFRVEQEVGSACHGFFGFNGTAGVWRVRALEEAGGWKERTTVEDMDLAVRASLRGWRFVY 293
Query: 66 VGDVKV 71
VG V V
Sbjct: 294 VGHVGV 299
>Os03g0770800 CSLC9
Length = 596
Score = 87.4 bits (215), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/56 (64%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLCSF 76
F +GTAGVWRI A+DD+GGW +RTTVEDMD+AVRA L+GWKF+++ DV+ C C
Sbjct: 303 FGFNGTAGVWRIKALDDSGGWMERTTVEDMDIAVRAHLRGWKFIFLNDVE-CQCEL 357
>Os08g0253800 Glycosyl transferase, family 2 domain containing protein
Length = 482
Score = 87.0 bits (214), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/56 (66%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLCSF 76
F +GTAGVWRI A++D+GGW +RTTVEDMD+AVRA L GWKF+++ DVKV LC
Sbjct: 162 FGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFIFLNDVKV-LCEL 216
>Os07g0124750
Length = 686
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLCSF 76
F +GTAGVWRI A++D+GGW +RTTVEDMD+AVRA L GWKFV++ DV+ C C
Sbjct: 392 FGFNGTAGVWRIKALEDSGGWMERTTVEDMDIAVRAHLNGWKFVFLNDVE-CQCEL 446
>Os09g0428000 Glycosyl transferase, family 2 domain containing protein
Length = 485
Score = 84.7 bits (208), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/56 (64%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLCSF 76
F +GTAGVWRI A++++GGW +RTTVEDMD+AVRA L GWKF+++ DVKV LC
Sbjct: 184 FGFNGTAGVWRIQALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKV-LCEL 238
>Os03g0169500 Similar to Cellulose synthase-like A4
Length = 624
Score = 80.9 bits (198), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/41 (78%), Positives = 41/41 (100%)
Query: 24 SGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFV 64
+GTAGVWR++AI++AGGWKDRTTVEDMDLAVRA+L+GW+F+
Sbjct: 303 TGTAGVWRVSAINEAGGWKDRTTVEDMDLAVRASLKGWQFL 343
>Os10g0406400 Conserved hypothetical protein
Length = 264
Score = 75.1 bits (183), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/41 (73%), Positives = 40/41 (97%)
Query: 31 RIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
R++AI+ +GGWKDRTTVEDMDLAVRA+L+GW+F+YVGD++V
Sbjct: 1 RVSAINQSGGWKDRTTVEDMDLAVRASLKGWEFLYVGDIRV 41
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.137 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,602,646
Number of extensions: 87468
Number of successful extensions: 289
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 13
Length of query: 77
Length of database: 17,035,801
Length adjustment: 48
Effective length of query: 29
Effective length of database: 14,529,529
Effective search space: 421356341
Effective search space used: 421356341
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)