FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0630900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.98 (0.0286) R2 : 0.527
β1 : -2.34 (0.11) R2dD : 0.623 R2D : 0.425
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.09 (0.137) R2dE : 0.0942 R2E : -0.091
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.431 (0.0668) R2dN8 : 0.0635 R2N8 : -0.0665
σ : 0.519
deviance : 124.02
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.57
memory length : 1327
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.75 0.499 5.02 -2.43 0.567 -1.26 -0.167 -0.136 -0.468 4.83 25.04 306 -- --
112.76 0.495 5.02 -2.45 0.561 -1.25 -0.21 -- -0.471 4.86 24.97 310 -- --
112.79 0.495 5.02 -2.42 0.56 -1.28 -- -0.227 -0.464 4.79 24.94 310 -- --
112.87 0.495 5.02 -2.45 0.563 -1.25 -- -- -0.47 4.8 25 310 -- --
126.58 0.524 5.01 -2.35 -- -1.11 -- -0.2 -0.397 -- 24.1 415 -- --
135.24 0.545 4.97 -2.13 0.397 -- -0.208 -- -0.222 5.04 -- -- -- --
135.33 0.545 4.97 -2.13 0.395 -- -- -- -0.221 4.89 -- -- -- --
124.02 0.519 4.98 -2.34 -- -1.09 -- -- -0.431 -- 26.57 1327 -- --
254.65 0.743 4.92 -- 0.427 -0.246 -- -- -0.0106 5.23 35.3 372 -- --
143.55 0.56 4.97 -2.12 -- -- -- -- -0.211 -- -- -- -- --
255.42 0.748 4.91 -- 0.357 -- -- -- 0.0165 5.08 -- -- -- --
260.57 0.752 4.94 -- -- 0.412 -- -- 0.029 -- 20.64 1052 -- --
262.1 0.756 4.92 -- -- -- -- -- 0.0242 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 112.27 temperature 25 270 < th dose dependent rect. 6 22
4 112.35 temperature 25 270 < th dose dependent rect. 3 23
11 112.77 temperature 25 4320 < th dose independent rect. 20 1
12 112.77 temperature 25 270 < th dose dependent rect. 14 22
16 112.97 temperature 25 270 < th dose dependent no NA NA
18 113.01 temperature 25 270 < th dose dependent rect. 19 23
27 113.13 radiation 20 4320 < th dose independent rect. 16 14
31 113.16 radiation 20 4320 < th dose independent rect. 16 2
35 113.19 temperature 25 4320 < th dose independent rect. 19 5
37 113.21 radiation 20 4320 < th dose independent rect. 16 4
42 113.25 radiation 20 4320 < th dose independent rect. 16 6
44 113.26 radiation 20 4320 < th dose independent rect. 16 8
57 113.33 temperature 10 720 > th dose dependent rect. 7 22
58 113.35 temperature 25 4320 > th dose independent rect. 19 5
60 113.37 temperature 10 720 > th dose dependent rect. 17 16
68 113.45 temperature 10 4320 > th dose dependent rect. 17 1
72 113.48 temperature 10 720 > th dose dependent rect. 17 18
74 113.49 temperature 25 4320 > th dose independent rect. 20 1
79 113.53 temperature 10 720 > th dose dependent rect. 17 20
81 113.55 temperature 30 4320 < th dose dependent rect. 17 1
84 113.57 temperature 10 720 > th dose dependent rect. 17 22
88 113.61 temperature 10 270 > th dose dependent rect. 24 23
110 113.76 temperature 25 4320 < th dose independent rect. 13 18
140 113.88 wind 9 43200 > th dose dependent rect. 16 15
148 113.92 temperature 25 4320 < th dose independent sin 14 NA
155 113.95 temperature 10 4320 > th dose dependent rect. 15 6
162 113.97 temperature 30 270 < th dose dependent rect. 19 16
173 113.99 temperature 15 270 > th dose dependent rect. 14 23
183 114.03 radiation 30 4320 < th dose independent rect. 15 17
197 114.06 temperature 25 4320 > th dose dependent rect. 17 9
205 114.08 temperature 30 4320 < th dose independent rect. 14 4
216 114.10 temperature 25 4320 < th dose independent rect. 19 13
220 114.11 temperature 25 4320 > th dose independent rect. 13 19
227 114.13 temperature 30 4320 > th dose independent rect. 14 4
237 114.14 temperature 10 720 > th dose dependent rect. 12 17
254 114.17 temperature 25 4320 > th dose dependent rect. 17 15
264 114.18 temperature 15 720 > th dose dependent rect. 12 21
281 114.20 temperature 15 270 > th dose dependent rect. 12 23
306 114.24 temperature 10 270 > th dose dependent no NA NA
310 114.25 temperature 25 4320 > th dose dependent rect. 17 4
323 114.26 temperature 10 720 > th dose dependent rect. 10 23
325 114.27 temperature 25 4320 > th dose independent sin 14 NA
370 114.33 temperature 10 720 > th dose dependent rect. 10 19
421 114.40 temperature 25 4320 > th dose independent rect. 18 14
435 114.42 wind 9 43200 < th dose independent rect. 17 15
488 114.48 wind 9 43200 > th dose independent rect. 17 15
546 114.54 temperature 15 720 > th dose dependent rect. 14 19
567 114.57 temperature 25 4320 > th dose dependent sin 13 NA
688 114.67 temperature 10 720 > th dose dependent rect. 3 23
697 114.68 temperature 10 1440 > th dose dependent rect. 7 18
702 114.69 temperature 10 4320 > th dose dependent sin 19 NA
705 114.69 temperature 10 1440 > th dose dependent rect. 3 19
756 114.73 temperature 10 1440 > th dose dependent sin 2 NA
797 114.75 radiation 20 4320 > th dose dependent rect. 16 15
864 114.78 temperature 10 1440 > th dose dependent rect. 3 12
891 114.79 temperature 10 1440 > th dose dependent rect. 4 10