Os10g0406400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0406400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.33 | 0.388 | 10.7 | -1.68 | 1.4 | -0.901 | 0.431 | -0.468 | -0.645 | 2.52 | 70 | 1184 | -- | -- |
| 68.74 | 0.386 | 10.7 | -1.69 | 1.4 | -0.932 | 0.566 | -- | -0.652 | 2.55 | 70 | 1173 | -- | -- |
| 68.94 | 0.387 | 10.7 | -1.67 | 1.4 | -0.895 | -- | -0.621 | -0.64 | 2.49 | 70.06 | 1186 | -- | -- |
| 69.67 | 0.389 | 10.7 | -1.76 | 1.4 | -0.936 | -- | -- | -0.67 | 2.49 | 70.9 | 1186 | -- | -- |
| 172.32 | 0.611 | 10.7 | -1.69 | -- | -1.47 | -- | -0.154 | -0.66 | -- | 73.31 | 1122 | -- | -- |
| 98.56 | 0.465 | 10.7 | -1.54 | 1.62 | -- | 0.631 | -- | -0.543 | 2.2 | -- | -- | -- | -- |
| 100.04 | 0.468 | 10.7 | -1.56 | 1.62 | -- | -- | -- | -0.546 | 2.18 | -- | -- | -- | -- |
| 171.05 | 0.609 | 10.7 | -1.75 | -- | -1.64 | -- | -- | -0.707 | -- | 74 | 1139 | -- | -- |
| 136.99 | 0.545 | 10.7 | -- | 1.67 | -1.32 | -- | -- | -0.47 | 2.13 | 84.83 | 1486 | -- | -- |
| 257.6 | 0.75 | 10.7 | -1.49 | -- | -- | -- | -- | -0.507 | -- | -- | -- | -- | -- |
| 163.96 | 0.599 | 10.7 | -- | 1.6 | -- | -- | -- | -0.373 | 2.16 | -- | -- | -- | -- |
| 243.57 | 0.729 | 10.6 | -- | -- | 0.825 | -- | -- | -0.326 | -- | 74.39 | 1131 | -- | -- |
| 316.1 | 0.83 | 10.6 | -- | -- | -- | -- | -- | -0.342 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 9 | 68.49 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 15 | 68.86 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 16 | 68.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 25 | 69.12 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 26 | 69.15 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 58 | 69.74 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 72 | 69.88 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 73 | 69.89 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 84 | 69.93 | humidity | 50 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 85 | 69.93 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 86 | 69.94 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 93 | 69.98 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 111 | 70.02 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 120 | 70.06 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 145 | 70.13 | humidity | 50 | 1440 | > th | dose dependent | sin | 2 | NA |
| 160 | 70.16 | humidity | 50 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 186 | 70.21 | humidity | 50 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 205 | 70.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 213 | 70.27 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 231 | 70.29 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 284 | 70.45 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 12 |
| 294 | 70.49 | humidity | 80 | 1440 | < th | dose dependent | sin | 9 | NA |
| 331 | 70.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 377 | 70.72 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 382 | 70.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 11 |
| 396 | 70.75 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 504 | 71.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 16 |
| 523 | 71.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 587 | 71.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 647 | 71.27 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 718 | 71.39 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 876 | 71.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 4 |