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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0770800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CSLC9.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.79 (0.0514) R2 : 0.542
β1 : -2.79 (0.191) R2dD : 0.228 R2D : 0.0876
β2 : 0.994 (0.139) R2dC : 0.0604 R2C : 0.121
β3 : 1.85 (0.143) R2dE : 0.192 R2E : 0.183
β4 : -3.75 (0.554) R2dD*C : 0.0478 R2D*C : 0.0108
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.805 (0.11) R2dN8 : 0.0739 R2N8 : 0.0124
σ : 0.96
deviance : 424.78
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_____
C
peak time of C : 20.2
E
wheather : temperature
threshold : 19.42
memory length : 764
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.6
open length of G : 2.17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
424.2 0.968 4.81 -2.92 1 1.9 -3.58 -0.921 -0.845 20 19.51 762 16.6 2.18
424.78 0.96 4.79 -2.79 0.994 1.85 -3.75 -- -0.805 20.2 19.42 764 16.6 2.17
457.06 0.996 4.81 -3.15 0.794 2.17 -- -2.76 -0.868 19.1 17.62 773 16.4 2.26
468.36 1.01 4.8 -2.61 1.04 1.76 -- -- -0.83 20.4 20.09 764 16.6 2.15
478.17 1.02 4.84 -3.08 -- 2.35 -- -2.58 -0.887 -- 17.05 744 16.2 2.08
529.08 1.08 4.8 -2.43 1.85 -- -2.69 -- -0.757 22 -- -- -- --
556.21 1.1 4.8 -2.33 1.86 -- -- -- -0.756 22.4 -- -- -- --
499.7 1.04 4.78 -2.74 -- 2.28 -- -- -0.808 -- 17.31 739 16.4 1.93
644.33 1.18 4.71 -- 1.34 1.35 -- -- -0.476 21.2 21.45 730 17.2 1.72
767.39 1.29 4.75 -2.3 -- -- -- -- -0.75 -- -- -- -- --
699.62 1.24 4.74 -- 1.85 -- -- -- -0.496 22.3 -- -- -- --
685.05 1.22 4.72 -- -- 1.94 -- -- -0.579 -- 9.004 685 16.4 2.47
907.24 1.41 4.69 -- -- -- -- -- -0.494 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 431.37 temperature 20 720 > th dose dependent rect. 17 2
2 433.09 temperature 20 720 > th dose dependent rect. 15 9
12 436.13 radiation 1 720 > th dose dependent rect. 18 11
16 437.17 radiation 1 720 > th dose dependent rect. 18 1
27 437.37 temperature 15 270 > th dose dependent rect. 15 14
41 439.57 radiation 1 720 > th dose independent rect. 17 2
52 439.74 temperature 20 270 > th dose dependent sin 13 NA
62 440.58 temperature 20 90 > th dose dependent sin 11 NA
64 440.72 temperature 20 720 > th dose dependent sin 16 NA
67 441.23 temperature 25 720 > th dose dependent rect. 17 16
85 441.78 temperature 15 90 > th dose dependent rect. 17 12
90 441.90 humidity 90 720 < th dose dependent rect. 17 2
108 443.05 temperature 30 720 < th dose independent rect. 17 14
133 444.55 humidity 80 720 < th dose dependent rect. 17 5
200 447.65 temperature 30 720 < th dose independent sin 12 NA
228 449.00 temperature 30 720 > th dose independent rect. 17 2
267 449.75 humidity 80 720 < th dose dependent rect. 17 15
292 450.60 radiation 30 14400 < th dose independent rect. 16 2
301 450.79 radiation 20 4320 > th dose dependent rect. 16 16
309 450.90 radiation 30 14400 < th dose independent rect. 16 11
311 450.92 radiation 30 14400 < th dose independent rect. 16 9
315 450.96 radiation 30 14400 < th dose independent rect. 16 6
344 451.60 temperature 30 720 < th dose dependent rect. 19 2
350 451.68 radiation 20 1440 > th dose independent rect. 16 15
368 452.22 radiation 20 1440 < th dose independent rect. 16 15
408 453.18 radiation 20 4320 < th dose independent rect. 6 2
424 453.48 radiation 20 4320 < th dose independent rect. 2 6
435 453.56 radiation 20 4320 < th dose independent rect. 20 12
437 453.58 radiation 20 4320 < th dose independent rect. 23 9
449 453.68 radiation 30 14400 > th dose independent rect. 16 16
466 454.00 temperature 10 720 > th dose dependent rect. 8 17
474 454.14 temperature 30 1440 > th dose dependent rect. 15 20
485 454.29 temperature 30 1440 > th dose independent sin 11 NA
496 454.49 humidity 60 4320 < th dose dependent rect. 17 3
572 454.62 radiation 20 1440 < th dose independent rect. 16 2
574 454.66 temperature 30 1440 < th dose independent rect. 17 18
596 454.75 temperature 30 1440 > th dose independent rect. 17 18
598 454.79 radiation 20 1440 < th dose independent rect. 16 6
624 455.00 radiation 20 1440 < th dose independent rect. 16 11
628 455.03 radiation 20 1440 < th dose independent rect. 16 8
651 455.21 radiation 20 4320 > th dose dependent rect. 6 2
672 455.31 radiation 20 1440 > th dose independent rect. 16 1
692 455.37 temperature 30 1440 < th dose independent rect. 16 11
713 455.44 temperature 30 1440 < th dose independent rect. 16 9
720 455.48 temperature 30 1440 > th dose dependent rect. 10 9
734 455.49 temperature 30 1440 < th dose independent rect. 16 3
736 455.50 temperature 30 1440 < th dose independent rect. 16 6
775 455.60 humidity 60 4320 > th dose independent rect. 18 4
795 455.64 temperature 30 1440 > th dose dependent no NA NA
893 455.70 radiation 10 1440 < th dose dependent rect. 18 1
897 455.75 humidity 60 4320 > th dose independent rect. 18 2
898 455.76 humidity 60 4320 > th dose independent rect. 18 9
900 455.76 temperature 30 1440 > th dose dependent rect. 17 23
901 455.77 temperature 20 90 > th dose independent rect. 16 13
903 455.78 humidity 60 4320 > th dose independent rect. 18 7
914 455.88 radiation 10 1440 < th dose dependent rect. 18 9
937 455.95 radiation 30 4320 > th dose independent rect. 7 1