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Os08g0434500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.97 (0.0607) R2 : 0.553
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.8 (0.153) R2dC : 0.328 R2C : 0.293
β3 : -3.51 (0.237) R2dE : 0.22 R2E : 0.211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.505 (0.129) R2dN8 : 0.019 R2N8 : 0.0346
σ : 1.14
deviance : 594.52
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C
peak time of C : 15.6
E
wheather : radiation
threshold : 0.4643
memory length : 4318
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 10.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
585.14 1.14 7.98 -2.12 2.73 -2.97 0.000999 3.27 0.0927 15.6 0.9035 4320 19 10.9
598.14 1.14 7.97 -1.29 2.69 -3.13 0.0921 -- 0.21 15.6 0.8498 4320 19 11
585.09 1.13 7.98 -2.12 2.73 -2.96 -- 3.25 0.0947 15.6 0.8799 4320 19 10.9
589.11 1.13 7.98 -1.27 2.78 -3.16 -- -- 0.246 15.7 0.4941 4322 19 11
975.5 1.45 7.92 -1.87 -- -2.71 -- 3.5 0.349 -- 6.207 534 19.3 11.2
839.44 1.36 7.8 -0.988 2.67 -- -0.258 -- 0.84 15.7 -- -- -- --
839.64 1.36 7.81 -0.992 2.66 -- -- -- 0.838 15.7 -- -- -- --
774.51 1.3 8.06 -0.624 -- -2.8 -- -- 0.307 -- 0.5983 4663 19.1 11.1
594.52 1.14 7.97 -- 2.8 -3.51 -- -- 0.505 15.6 0.4643 4318 19.1 10.3
1233.56 1.64 7.8 -1.1 -- -- -- -- 0.767 -- -- -- -- --
865.6 1.38 7.78 -- 2.68 -- -- -- 0.949 15.6 -- -- -- --
644.11 1.18 7.89 -- -- -4.75 -- -- 0.595 -- 0.5416 4789 17.6 12.6
1265.7 1.66 7.77 -- -- -- -- -- 0.89 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 585.73 radiation 30 14400 < th dose independent rect. 21 10
2 586.12 radiation 30 14400 < th dose independent rect. 24 7
4 587.06 radiation 30 14400 < th dose independent rect. 17 14
5 587.14 radiation 1 4320 < th dose dependent rect. 19 11
6 587.37 radiation 1 4320 < th dose dependent rect. 4 2
7 587.42 radiation 1 4320 < th dose dependent rect. 1 5
11 587.67 radiation 1 4320 < th dose dependent rect. 22 8
14 587.78 radiation 30 14400 < th dose independent rect. 2 5
23 592.52 radiation 1 14400 > th dose dependent rect. 18 11
24 593.10 radiation 10 43200 < th dose dependent rect. 19 10
25 593.16 radiation 10 43200 < th dose dependent rect. 4 1
26 593.16 radiation 10 43200 < th dose dependent rect. 2 3
27 593.24 radiation 10 43200 < th dose dependent rect. 22 7
45 596.23 humidity 90 43200 > th dose independent rect. 5 1
47 596.38 radiation 1 14400 < th dose dependent rect. 18 3
48 596.46 radiation 1 14400 < th dose dependent rect. 18 5
53 596.53 radiation 1 14400 > th dose dependent rect. 18 1
72 597.60 radiation 1 43200 < th dose independent rect. 18 3
73 597.64 radiation 1 43200 < th dose independent rect. 18 6
76 597.67 radiation 1 43200 < th dose independent rect. 18 8
85 598.49 wind 5 43200 < th dose independent rect. 11 4
88 598.88 atmosphere 1015 43200 < th dose independent rect. 17 1
90 598.98 atmosphere 1015 43200 < th dose independent rect. 15 1
91 599.02 humidity 90 43200 > th dose dependent rect. 5 1
92 599.03 wind 5 43200 > th dose independent rect. 11 4
94 599.15 atmosphere 1015 43200 < th dose independent rect. 15 3
102 599.39 wind 3 43200 > th dose dependent rect. 13 1
113 599.62 radiation 1 43200 < th dose dependent rect. 9 1
118 599.72 atmosphere 1015 43200 > th dose independent rect. 15 1
152 602.50 temperature 15 43200 < th dose independent rect. 5 2
160 602.77 wind 3 43200 > th dose dependent rect. 11 4
166 603.01 temperature 15 43200 > th dose independent rect. 13 1
167 603.12 temperature 15 43200 > th dose independent rect. 10 5
171 603.26 temperature 15 43200 < th dose independent rect. 13 1
178 603.43 temperature 15 43200 < th dose independent rect. 3 1
181 603.55 radiation 30 14400 > th dose independent rect. 16 16
186 603.80 temperature 15 43200 < th dose independent rect. 3 12
207 604.04 radiation 1 14400 < th dose dependent rect. 8 5
214 604.19 radiation 1 43200 < th dose independent rect. 22 7
223 604.39 humidity 80 43200 < th dose independent rect. 12 2
233 604.58 temperature 15 43200 < th dose independent rect. 3 8
235 604.65 temperature 15 43200 < th dose independent rect. 10 1
236 604.67 temperature 15 43200 > th dose independent rect. 10 1
237 604.70 radiation 1 43200 > th dose independent rect. 4 1
247 604.70 radiation 1 43200 > th dose dependent rect. 4 1
274 605.00 radiation 1 43200 < th dose independent rect. 8 1
275 605.00 temperature 15 43200 > th dose independent rect. 5 10
276 605.02 temperature 15 43200 < th dose independent rect. 10 4
279 605.03 radiation 10 14400 < th dose independent rect. 17 13
281 605.06 temperature 15 43200 < th dose independent rect. 9 6
284 605.08 radiation 1 43200 > th dose independent rect. 8 1
293 605.24 temperature 15 43200 < th dose independent rect. 5 6
303 605.47 radiation 1 43200 < th dose independent rect. 24 5
306 605.50 radiation 1 43200 < th dose independent rect. 8 3
312 605.57 temperature 15 43200 < th dose independent rect. 3 4
322 605.72 humidity 80 43200 > th dose independent rect. 12 2
335 606.01 temperature 15 43200 > th dose independent rect. 3 15
336 606.10 radiation 40 43200 < th dose independent rect. 15 1
342 606.15 wind 5 43200 > th dose independent rect. 11 10
347 606.19 radiation 40 43200 < th dose independent rect. 15 12
349 606.20 temperature 15 43200 > th dose independent rect. 3 12
363 606.31 temperature 15 43200 < th dose independent sin 2 NA
373 606.44 radiation 40 43200 < th dose independent rect. 15 8
380 606.47 radiation 1 43200 < th dose independent rect. 4 1
388 606.55 radiation 40 43200 < th dose independent rect. 15 5
395 606.62 radiation 20 43200 < th dose independent rect. 17 10
409 606.79 temperature 15 43200 > th dose independent sin 1 NA
420 606.91 humidity 90 43200 > th dose dependent rect. 4 7
430 607.09 humidity 90 43200 > th dose dependent rect. 3 9
432 607.11 wind 5 43200 < th dose independent rect. 11 10
475 607.44 humidity 90 43200 > th dose dependent rect. 5 4
494 607.65 radiation 20 43200 < th dose independent rect. 17 6
508 607.74 humidity 80 43200 < th dose independent rect. 12 6
535 608.03 humidity 90 43200 > th dose dependent rect. 8 1
536 608.05 radiation 20 43200 < th dose independent rect. 17 3
538 608.07 radiation 20 43200 < th dose independent rect. 17 1
555 608.35 temperature 15 43200 > th dose independent rect. 3 1
558 608.38 temperature 15 43200 > th dose independent rect. 3 20
559 608.38 radiation 1 4320 < th dose dependent sin 11 NA
573 608.50 radiation 1 43200 > th dose independent rect. 18 1
649 609.04 temperature 15 43200 < th dose independent rect. 22 20
796 609.84 temperature 15 43200 < th dose independent rect. 9 22
822 609.99 temperature 15 43200 < th dose independent rect. 13 23
826 610.02 temperature 15 43200 < th dose independent rect. 17 22
834 610.06 temperature 15 43200 < th dose independent no NA NA
863 610.20 humidity 90 43200 > th dose independent rect. 4 7
875 610.23 radiation 20 14400 > th dose dependent rect. 17 14
901 610.36 temperature 15 43200 > th dose independent rect. 6 1
908 610.40 temperature 15 43200 < th dose independent rect. 22 13
926 610.50 temperature 15 43200 < th dose independent rect. 13 18
930 610.52 temperature 15 43200 < th dose independent rect. 5 23
956 610.66 temperature 15 43200 > th dose independent rect. 22 22
962 610.68 atmosphere 1005 43200 > th dose independent rect. 16 1
987 610.81 humidity 90 43200 < th dose independent rect. 19 3