BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0434500 Os08g0434500|J090014M07
(77 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22740.1 | chr5:7555379-7559866 REVERSE LENGTH=535 94 2e-20
AT1G23480.1 | chr1:8333917-8336230 FORWARD LENGTH=557 92 6e-20
AT5G03760.1 | chr5:985910-990087 REVERSE LENGTH=534 91 2e-19
AT5G16190.1 | chr5:5283663-5286293 REVERSE LENGTH=444 89 6e-19
AT2G35650.1 | chr2:14985625-14988187 FORWARD LENGTH=557 88 8e-19
AT3G07330.1 | chr3:2336121-2338942 REVERSE LENGTH=683 87 1e-18
AT2G24630.1 | chr2:10471558-10473984 REVERSE LENGTH=691 87 3e-18
AT4G31590.1 | chr4:15309889-15312336 REVERSE LENGTH=693 86 5e-18
AT4G07960.1 | chr4:4802628-4805114 REVERSE LENGTH=700 85 8e-18
AT1G24070.1 | chr1:8516437-8519734 REVERSE LENGTH=553 85 8e-18
AT4G13410.1 | chr4:7792219-7795824 REVERSE LENGTH=538 85 8e-18
AT3G28180.1 | chr3:10506110-10509067 FORWARD LENGTH=674 84 1e-17
AT3G56000.1 | chr3:20783462-20785684 REVERSE LENGTH=536 82 4e-17
AT4G16590.1 | chr4:9345757-9349039 FORWARD LENGTH=402 81 9e-17
>AT5G22740.1 | chr5:7555379-7559866 REVERSE LENGTH=535
Length = 534
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/51 (76%), Positives = 49/51 (96%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAG+WRIAAI++AGGWKDRTTVEDMDLAVRA+L+GWKF+Y+GD++V
Sbjct: 261 FGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQV 311
>AT1G23480.1 | chr1:8333917-8336230 FORWARD LENGTH=557
Length = 556
Score = 92.0 bits (227), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/51 (80%), Positives = 46/51 (90%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWRIAA+++AGGWKDRTTVEDMDLAVRA L GWKFVYV DV+V
Sbjct: 284 FGFNGTAGVWRIAALNEAGGWKDRTTVEDMDLAVRACLHGWKFVYVHDVEV 334
>AT5G03760.1 | chr5:985910-990087 REVERSE LENGTH=534
Length = 533
Score = 90.5 bits (223), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 48/51 (94%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAG+WRI+A+++AGGWKDRTTVEDMDLAVRA+L+GWKF+Y+G +KV
Sbjct: 261 FGFNGTAGIWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGSLKV 311
>AT5G16190.1 | chr5:5283663-5286293 REVERSE LENGTH=444
Length = 443
Score = 88.6 bits (218), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWR+AA+++AGGWKDRTTVEDMDLAVR L GWKFV+V DV V
Sbjct: 177 FGFNGTAGVWRLAAMEEAGGWKDRTTVEDMDLAVRVGLHGWKFVFVNDVSV 227
>AT2G35650.1 | chr2:14985625-14988187 FORWARD LENGTH=557
Length = 556
Score = 88.2 bits (217), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/59 (66%), Positives = 50/59 (84%), Gaps = 3/59 (5%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV---CLCSF 76
F +GTAGVWRI+A++++GGW D+TTVEDMDLAVRATL+GWKF+Y+ D+KV CSF
Sbjct: 283 FGFNGTAGVWRISALNESGGWNDQTTVEDMDLAVRATLRGWKFLYIDDLKVKSELPCSF 341
>AT3G07330.1 | chr3:2336121-2338942 REVERSE LENGTH=683
Length = 682
Score = 87.4 bits (215), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLCSF 76
F +GTAGVWRI A++D GGW +RTTVEDMD+AVRA L GWKF+Y+ DVK CLC
Sbjct: 385 FGFNGTAGVWRIKALEDCGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVK-CLCEL 439
>AT2G24630.1 | chr2:10471558-10473984 REVERSE LENGTH=691
Length = 690
Score = 86.7 bits (213), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/54 (68%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLC 74
F +GTAGVWRI A++++GGW +RTTVEDMD+AVRA L GWKF+Y+ DVKV LC
Sbjct: 391 FGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIYLNDVKV-LC 443
>AT4G31590.1 | chr4:15309889-15312336 REVERSE LENGTH=693
Length = 692
Score = 85.5 bits (210), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/54 (68%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLC 74
F +GTAGVWRI A++++GGW +RTTVEDMD+AVRA L GWKF+Y+ DVKV LC
Sbjct: 391 FGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIYLNDVKV-LC 443
>AT4G07960.1 | chr4:4802628-4805114 REVERSE LENGTH=700
Length = 699
Score = 84.7 bits (208), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/56 (64%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKVCLCSF 76
F +GTAGVWRI A++D+GGW +RTTVEDMD+AVRA L GWKFV++ DV+ C C
Sbjct: 405 FGFNGTAGVWRIKALEDSGGWLERTTVEDMDIAVRAHLHGWKFVFLNDVE-CQCEL 459
>AT1G24070.1 | chr1:8516437-8519734 REVERSE LENGTH=553
Length = 552
Score = 84.7 bits (208), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/51 (70%), Positives = 44/51 (86%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWR+AA+++AGGW DRTTVEDMDLAVRA L GWKFV++ D+ V
Sbjct: 286 FSFNGTAGVWRMAAMEEAGGWHDRTTVEDMDLAVRAGLLGWKFVFLNDLTV 336
>AT4G13410.1 | chr4:7792219-7795824 REVERSE LENGTH=538
Length = 537
Score = 84.7 bits (208), Expect = 8e-18, Method: Composition-based stats.
Identities = 35/51 (68%), Positives = 44/51 (86%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWR+ A+++AGGWKDRTTVEDMDLAVR L GWKF++V D++V
Sbjct: 275 FGFNGTAGVWRMVAMEEAGGWKDRTTVEDMDLAVRVGLLGWKFIFVNDLEV 325
>AT3G28180.1 | chr3:10506110-10509067 FORWARD LENGTH=674
Length = 673
Score = 84.0 bits (206), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 44/51 (86%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWRI A++++GGW +RTTVEDMD+AVRA L GWKF+Y+ DV+V
Sbjct: 363 FGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVEV 413
>AT3G56000.1 | chr3:20783462-20785684 REVERSE LENGTH=536
Length = 535
Score = 82.4 bits (202), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWRI A+++A GWKDRT VEDMDLAVRA L+G KFVYV DVKV
Sbjct: 259 FGFNGTAGVWRIKALNEAEGWKDRTIVEDMDLAVRAYLRGSKFVYVDDVKV 309
>AT4G16590.1 | chr4:9345757-9349039 FORWARD LENGTH=402
Length = 401
Score = 81.3 bits (199), Expect = 9e-17, Method: Composition-based stats.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 21 FHLSGTAGVWRIAAIDDAGGWKDRTTVEDMDLAVRATLQGWKFVYVGDVKV 71
F +GTAGVWRI+A++ AGGWK RTTVEDMDLAVR L GWKFVY+ D+ V
Sbjct: 136 FGFNGTAGVWRISAMEAAGGWKSRTTVEDMDLAVRVGLHGWKFVYLNDLTV 186
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.137 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,623,764
Number of extensions: 50797
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 14
Length of query: 77
Length of database: 11,106,569
Length adjustment: 49
Effective length of query: 28
Effective length of database: 9,763,185
Effective search space: 273369180
Effective search space used: 273369180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)