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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0572500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-1,4-mannan synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0187) R2 : 0.0413
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.175 (0.0394) R2dN8 : 0.0533 R2N8 : 0.0413
σ : 0.353
deviance : 57.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.02 0.339 2.89 0.0739 0.174 -0.163 -0.488 -1.06 0.187 6.82 69.77 4673 -- --
53.3 0.34 2.88 0.103 0.189 -0.262 -0.398 -- 0.244 6.69 72 7183 -- --
52.42 0.337 2.89 0.0529 0.18 -0.191 -- -1.08 0.19 6.31 69.79 5912 -- --
53.64 0.341 2.88 0.0994 0.188 -0.28 -- -- 0.247 6.02 72.11 6978 -- --
54 0.342 2.89 0.041 -- -0.261 -- -0.772 0.23 -- 72 6356 -- --
54.46 0.346 2.9 0.126 0.185 -- -0.422 -- 0.184 6.84 -- -- -- --
54.87 0.347 2.9 0.118 0.186 -- -- -- 0.184 6.32 -- -- -- --
54.83 0.345 2.89 0.0993 -- -0.327 -- -- 0.256 -- 72.74 6444 -- --
53.87 0.342 2.89 -- 0.188 -0.287 -- -- 0.237 5.95 72 6978 -- --
56.68 0.352 2.9 0.123 -- -- -- -- 0.188 -- -- -- -- --
55.24 0.348 2.9 -- 0.188 -- -- -- 0.171 6.29 -- -- -- --
55.05 0.346 2.89 -- -- -0.319 -- -- 0.256 -- 75 6419 -- --
57.08 0.353 2.9 -- -- -- -- -- 0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.52 wind 1.0 1440 < th dose dependent rect. 17 1
2 50.71 wind 1.0 1440 < th dose independent rect. 17 1
3 50.82 wind 3.0 4320 < th dose dependent rect. 17 3
9 51.10 wind 1.0 4320 > th dose independent rect. 15 5
12 51.16 wind 1.0 4320 < th dose independent rect. 15 5
16 51.23 atmosphere 1005.0 43200 < th dose independent rect. 1 1
18 51.29 atmosphere 1005.0 43200 > th dose independent rect. 1 1
20 51.32 wind 1.0 1440 > th dose independent rect. 19 1
21 51.32 radiation 10.0 4320 < th dose independent rect. 9 1
24 51.36 wind 3.0 4320 < th dose dependent rect. 12 9
26 51.38 wind 1.0 1440 > th dose independent rect. 17 1
28 51.39 atmosphere 1005.0 43200 < th dose independent rect. 23 5
38 51.42 wind 3.0 1440 < th dose independent rect. 11 2
52 51.45 atmosphere 1005.0 43200 > th dose independent rect. 11 1
55 51.45 wind 1.0 1440 < th dose dependent rect. 8 3
59 51.46 humidity 90.0 4320 > th dose independent rect. 16 1
61 51.46 atmosphere 1005.0 43200 < th dose independent rect. 11 1
69 51.48 radiation 1.0 270 > th dose independent rect. 4 1
82 51.48 radiation 1.0 270 > th dose dependent rect. 4 1
108 51.51 wind 3.0 1440 < th dose dependent rect. 8 12
109 51.52 wind 3.0 1440 > th dose independent rect. 12 1
130 51.56 wind 3.0 4320 < th dose dependent rect. 14 9
150 51.59 wind 3.0 1440 < th dose dependent rect. 8 18
151 51.60 wind 1.0 1440 < th dose independent rect. 19 1
159 51.61 wind 1.0 270 < th dose independent rect. 19 1
163 51.61 wind 1.0 1440 > th dose independent rect. 17 7
164 51.61 atmosphere 1005.0 43200 > th dose independent rect. 19 10
166 51.61 wind 1.0 270 < th dose dependent rect. 19 1
171 51.62 wind 1.0 1440 < th dose independent rect. 8 2
182 51.63 wind 9.0 4320 < th dose independent rect. 4 7
188 51.64 wind 9.0 4320 > th dose independent rect. 3 1
226 51.64 wind 9.0 4320 < th dose independent rect. 2 9
230 51.64 wind 9.0 4320 > th dose dependent rect. 3 1
276 51.66 humidity 90.0 4320 > th dose dependent rect. 16 2
277 51.66 humidity 90.0 4320 > th dose dependent rect. 9 3
285 51.68 wind 1.0 1440 > th dose independent rect. 8 2
296 51.68 humidity 90.0 4320 > th dose dependent rect. 9 10
306 51.70 humidity 90.0 4320 < th dose independent rect. 10 4
307 51.70 humidity 90.0 4320 > th dose independent rect. 9 5
313 51.70 humidity 90.0 4320 > th dose dependent rect. 9 5
341 51.73 atmosphere 1005.0 43200 < th dose independent sin 11 NA
344 51.73 wind 1.0 14400 < th dose independent rect. 18 2
352 51.73 precipitation 0.1 4320 > th dose dependent rect. 5 7
358 51.74 humidity 70.0 4320 < th dose independent rect. 12 1
359 51.74 wind 3.0 4320 > th dose dependent rect. 3 1
369 51.75 precipitation 0.1 4320 < th dose independent rect. 5 7
371 51.75 wind 1.0 4320 > th dose independent rect. 14 9
375 51.75 precipitation 0.1 4320 < th dose dependent rect. 5 7
385 51.76 radiation 10.0 4320 < th dose dependent rect. 7 4
400 51.77 wind 1.0 720 < th dose independent rect. 13 12
414 51.78 precipitation 0.1 4320 > th dose independent rect. 5 7
420 51.78 atmosphere 1005.0 43200 < th dose independent rect. 18 20
423 51.79 atmosphere 1005.0 43200 > th dose independent sin 11 NA
424 51.79 wind 1.0 1440 < th dose independent rect. 17 7
442 51.80 atmosphere 1005.0 43200 < th dose independent rect. 18 18
444 51.80 atmosphere 1005.0 43200 < th dose independent rect. 21 19
496 51.83 wind 3.0 1440 > th dose independent rect. 9 5
498 51.83 wind 3.0 1440 < th dose independent rect. 9 5
512 51.83 atmosphere 1005.0 43200 > th dose independent rect. 18 20
532 51.84 atmosphere 1005.0 43200 > th dose independent rect. 18 18
550 51.85 atmosphere 1005.0 43200 > th dose independent rect. 22 16
555 51.85 atmosphere 1005.0 43200 < th dose independent rect. 9 20
561 51.85 humidity 90.0 4320 > th dose dependent rect. 13 7
565 51.86 wind 3.0 14400 < th dose independent rect. 16 1
586 51.86 wind 3.0 1440 < th dose dependent sin 20 NA
599 51.87 humidity 70.0 4320 < th dose independent rect. 11 4
602 51.87 wind 3.0 1440 < th dose independent rect. 8 7
605 51.87 wind 1.0 720 < th dose independent rect. 16 9
634 51.88 wind 1.0 1440 > th dose independent rect. 22 1
668 51.88 wind 3.0 720 < th dose dependent rect. 12 14
674 51.89 atmosphere 1005.0 43200 < th dose independent no NA NA
675 51.89 humidity 80.0 4320 < th dose independent rect. 9 1
684 51.89 humidity 90.0 4320 > th dose independent rect. 7 11
689 51.89 humidity 70.0 14400 < th dose independent rect. 18 15
716 51.90 humidity 70.0 4320 < th dose independent rect. 9 7
717 51.90 humidity 70.0 4320 < th dose independent rect. 11 9
749 51.90 atmosphere 1005.0 43200 < th dose independent rect. 1 23
765 51.91 wind 3.0 4320 < th dose independent rect. 12 9
766 51.91 humidity 90.0 4320 > th dose independent rect. 8 9
778 51.91 wind 1.0 720 < th dose independent rect. 9 16
909 51.94 humidity 70.0 14400 > th dose independent rect. 18 15
951 51.95 wind 3.0 4320 < th dose independent rect. 9 12
978 51.95 wind 3.0 1440 < th dose dependent rect. 8 7
982 51.96 atmosphere 1005.0 43200 < th dose independent sin 3 NA
986 51.96 humidity 80.0 14400 > th dose independent rect. 7 2