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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0230100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.76 (0.0197) R2 : 0.336
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.13 (0.338) R2dE : 0.337 R2E : 0.332
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0663 (0.0416) R2dN8 : 0.00481 R2N8 : -0.000848
σ : 0.37
deviance : 63.17
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.6906
memory length : 8
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 15.5
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.32 0.371 2.79 -0.14 0.0491 7.59 0.211 -12.5 0.0698 2.73 0.9988 10 14.2 --
65.69 0.377 2.78 -0.143 0.0301 5.09 0.257 -- 0.0405 2.7 0.7429 8 15.1 --
61.4 0.365 2.78 -0.139 0.0542 7.69 -- -12.5 0.0722 2.08 0.8996 10 14.3 --
63.07 0.37 2.77 -0.0178 0.042 5.17 -- -- 0.0579 1.87 0.7 8 15.5 --
61.56 0.365 2.79 -0.125 -- 7.71 -- -12.6 0.0678 -- 0.8996 10 14.3 --
94.87 0.457 2.77 0.0432 0.0517 -- -0.195 -- 0.0288 7.36 -- -- -- --
94.94 0.456 2.77 0.038 0.0569 -- -- -- 0.0287 5.9 -- -- -- --
63.16 0.37 2.77 -0.0198 -- 5.15 -- -- 0.0645 -- 0.7 8 15.4 --
63.04 0.37 2.76 -- 0.0476 5.13 -- -- 0.0652 3.54 0.6923 8 15.4 --
95.11 0.456 2.77 0.0397 -- -- -- -- 0.03 -- -- -- -- --
94.98 0.456 2.77 -- 0.0575 -- -- -- 0.0245 5.87 -- -- -- --
63.17 0.37 2.76 -- -- 5.13 -- -- 0.0663 -- 0.6906 8 15.5 --
95.15 0.455 2.77 -- -- -- -- -- 0.0256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.81 wind 1 10 < th dose dependent rect. 9 6
23 59.64 wind 1 10 < th dose independent rect. 9 6
26 59.76 wind 1 10 < th dose independent rect. 9 13
74 62.59 wind 1 10 < th dose independent sin 20 NA
95 64.43 wind 1 10 < th dose dependent sin 21 NA
98 65.14 wind 1 10 > th dose independent sin 20 NA
130 69.29 wind 1 90 < th dose independent rect. 12 1
133 69.39 wind 1 90 < th dose dependent rect. 12 1
154 69.66 wind 1 10 < th dose dependent rect. 13 1
511 79.73 humidity 60 4320 < th dose independent rect. 8 1
524 79.74 humidity 60 1440 < th dose dependent rect. 8 1
537 79.74 humidity 60 90 < th dose dependent rect. 17 17
538 79.75 humidity 60 270 < th dose independent rect. 8 1
564 79.75 humidity 60 270 < th dose dependent rect. 8 1
604 79.76 humidity 60 90 < th dose independent rect. 18 15
605 79.76 humidity 60 30 < th dose independent rect. 17 17
612 79.78 humidity 60 1440 > th dose independent rect. 7 2
614 79.78 humidity 60 10 < th dose dependent rect. 17 17
626 79.82 humidity 60 30 < th dose independent rect. 9 1
657 79.82 humidity 60 10 < th dose dependent rect. 9 1
709 79.83 humidity 60 1440 > th dose independent rect. 2 7
714 79.83 wind 1 10 < th dose dependent rect. 8 2
799 79.86 humidity 60 1440 > th dose independent rect. 22 11
849 79.98 wind 1 10 < th dose independent rect. 8 2
856 80.07 radiation 40 30 > th dose dependent rect. 9 2
998 80.59 humidity 60 1440 > th dose independent rect. 20 13