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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0192500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cellulose synthase-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.46 (0.0924) R2 : 0.738
β1 : -9.42 (0.543) R2dD : 0.792 R2D : 0.179
β2 : 2.5 (0.185) R2dC : 0.107 R2C : 0.102
β3 : 5.58 (0.286) R2dE : 0.403 R2E : 0.0538
β4 : -4.38 (0.848) R2dD*C : 0.0154 R2D*C : -0.018
β5 : -8.17 (1.95) R2dD*E : 0.0471 R2D*E : -0.297
γ1 : -1.18 (0.197) R2dN8 : 0.0471 R2N8 : -0.0728
σ : 1.33
deviance : 803.33
__
_____
C
peak time of C : 17.7
E
wheather : temperature
threshold : 24.44
memory length : 1118
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 17.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
803.33 1.33 7.46 -9.42 2.5 5.58 -4.38 -8.17 -1.18 17.7 24.44 1118 17.1 --
827.97 1.34 7.23 -7.46 2.5 5.07 -4.56 -- -0.741 17.7 23.48 1062 15.9 --
847.82 1.36 7.47 -9.33 2.6 5.5 -- -7.78 -1.21 17.9 24.19 1126 16.5 --
875.76 1.38 7.24 -7.46 2.83 4.69 -- -- -0.711 18.1 24.06 1155 16.1 --
956.07 1.44 7.36 -8.9 -- 6.6 -- -7.92 -1.13 -- 23 867 17 --
1579.53 1.86 7.12 -6.02 3.06 -- -2.75 -- -0.0986 19.4 -- -- -- --
1597.6 1.87 7.13 -5.96 3.05 -- -- -- -0.108 19.6 -- -- -- --
998.68 1.47 7.33 -8.18 -- 7.66 -- -- -1.19 -- 11.64 2152 16.5 --
2144.03 2.16 6.85 -- 3.11 3.36 -- -- 1.05 18.7 27.8 917 6.25 --
2098 2.14 7.05 -6 -- -- -- -- -0.154 -- -- -- -- --
2534.26 2.35 6.98 -- 3.1 -- -- -- 0.556 19.5 -- -- -- --
2389.04 2.28 6.98 -- -- 5.08 -- -- 0.201 -- -42.95 1672 12.4 --
3048.56 2.58 6.9 -- -- -- -- -- 0.512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 852.04 temperature 25 1440 > th dose dependent rect. 16 1
2 858.39 temperature 25 1440 > th dose dependent rect. 13 21
3 859.34 temperature 25 1440 > th dose dependent rect. 6 17
40 861.94 temperature 25 1440 > th dose dependent sin 21 NA
64 863.10 temperature 25 1440 > th dose dependent rect. 15 4
95 864.38 temperature 25 1440 > th dose dependent rect. 21 22
107 864.91 temperature 25 1440 > th dose dependent no NA NA
111 865.28 temperature 25 1440 > th dose dependent rect. 11 12
131 866.37 temperature 25 1440 > th dose dependent rect. 13 10
150 867.00 temperature 25 1440 > th dose dependent rect. 15 8
182 868.86 temperature 25 1440 > th dose dependent rect. 13 7
197 869.79 wind 5 43200 > th dose independent rect. 3 13
206 870.19 wind 5 43200 < th dose independent rect. 3 13
241 872.96 wind 5 43200 > th dose independent rect. 2 15
246 873.47 wind 5 43200 > th dose independent rect. 24 17
256 874.43 wind 5 43200 < th dose independent rect. 24 17
306 879.77 wind 5 43200 > th dose independent rect. 9 6
310 880.04 wind 5 43200 < th dose independent rect. 20 21
311 880.09 wind 5 43200 > th dose independent sin 2 NA
319 880.72 wind 5 43200 > th dose independent rect. 20 21
330 882.21 wind 5 43200 < th dose independent sin 2 NA
332 882.21 wind 5 43200 > th dose dependent rect. 3 13
337 883.14 temperature 30 1440 < th dose independent rect. 18 22
349 884.96 temperature 30 1440 < th dose independent rect. 13 23
354 885.78 temperature 30 1440 < th dose independent rect. 9 18
356 885.86 wind 5 43200 < th dose independent rect. 8 7
357 885.87 temperature 30 1440 < th dose independent rect. 9 23
359 885.89 temperature 30 1440 < th dose independent rect. 9 16
372 886.34 temperature 30 1440 < th dose independent rect. 9 12
378 886.62 temperature 30 1440 < th dose independent rect. 9 10
380 886.83 wind 5 43200 > th dose dependent rect. 9 7
412 889.11 temperature 30 1440 < th dose independent rect. 6 21
415 889.22 temperature 30 1440 < th dose independent rect. 6 19
432 889.42 temperature 30 1440 < th dose independent rect. 2 23
433 889.44 temperature 30 1440 < th dose independent rect. 9 7
435 889.49 temperature 30 1440 < th dose independent rect. 20 23
436 889.49 temperature 30 1440 < th dose independent rect. 22 23
437 889.50 temperature 30 1440 < th dose independent no NA NA
441 889.52 temperature 30 1440 < th dose independent rect. 24 23
453 889.65 temperature 30 1440 > th dose independent rect. 18 22
456 889.66 temperature 30 1440 < th dose independent sin 21 NA
462 889.67 temperature 30 1440 < th dose independent rect. 6 15
485 889.87 temperature 30 1440 < th dose independent rect. 2 19
494 889.93 temperature 30 1440 > th dose independent rect. 9 10
544 890.94 temperature 30 1440 > th dose independent rect. 13 23
582 892.27 wind 5 43200 > th dose dependent rect. 19 22
609 892.90 wind 5 43200 > th dose dependent rect. 10 20
616 893.06 temperature 30 1440 < th dose independent rect. 20 20
621 893.21 temperature 30 1440 > th dose independent sin 20 NA
626 893.39 temperature 30 1440 < th dose independent rect. 22 18
631 893.60 temperature 30 1440 < th dose independent rect. 6 10
635 893.79 wind 5 43200 > th dose dependent sin 1 NA
638 893.88 temperature 30 1440 < th dose independent rect. 2 14
640 893.89 temperature 30 1440 > th dose independent rect. 9 7
661 894.44 temperature 30 1440 > th dose independent no NA NA
808 895.89 wind 5 43200 > th dose dependent rect. 3 19
869 897.27 wind 5 43200 > th dose dependent rect. 24 22
878 897.72 wind 7 43200 < th dose independent rect. 3 19
890 898.43 wind 5 43200 > th dose independent rect. 24 22
901 898.89 wind 7 43200 > th dose independent rect. 3 19
922 899.69 temperature 30 1440 < th dose independent rect. 13 14
925 899.81 temperature 30 1440 < th dose independent rect. 13 12
946 899.95 temperature 30 1440 < th dose independent rect. 13 19
963 900.37 temperature 30 1440 < th dose independent rect. 13 8
971 900.60 wind 5 43200 > th dose dependent rect. 9 14
972 900.63 temperature 30 1440 > th dose independent rect. 13 6
987 900.76 temperature 30 1440 < th dose independent rect. 13 6