BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0321000 Os08g0321000|AK068096
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein 614 e-176
Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein 434 e-122
Os04g0574200 Beta-Ig-H3/fasciclin domain containing protein 194 1e-49
Os09g0476800 Glutelin family protein 139 4e-33
Os02g0726000 Beta-Ig-H3/fasciclin domain containing protein 139 5e-33
Os05g0459700 Beta-Ig-H3/fasciclin domain containing protein 128 8e-30
Os01g0841100 Beta-Ig-H3/fasciclin domain containing protein 127 1e-29
Os02g0461500 Beta-Ig-H3/fasciclin domain containing protein 108 6e-24
Os08g0490600 Beta-Ig-H3/fasciclin domain containing protein 99 9e-21
Os06g0656800 Beta-Ig-H3/fasciclin domain containing protein 90 3e-18
Os06g0285100 84 2e-16
Os04g0283600 80 4e-15
Os05g0563600 Beta-Ig-H3/fasciclin domain containing protein 70 2e-12
Os03g0128000 Hypothetical protein 67 2e-11
>Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein
Length = 415
Score = 614 bits (1584), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/318 (95%), Positives = 305/318 (95%)
Query: 24 EGYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTL 83
EGYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTL
Sbjct: 24 EGYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTL 83
Query: 84 RHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAE 143
RHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAE
Sbjct: 84 RHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAE 143
Query: 144 DAADSATPSSFVKSVKEIPYDLAVLQISKPLSSXXXXXXXXXXXXXNLTELLSKKYCKNF 203
DAADSATPSSFVKSVKEIPYDLAVLQISKPLSS NLTELLSKKYCKNF
Sbjct: 144 DAADSATPSSFVKSVKEIPYDLAVLQISKPLSSPEAEAPVAPPAPVNLTELLSKKYCKNF 203
Query: 204 AGLLASNADVYSNINATKDNGLTLFCPVDAAVDAFLPKYKNLTAKGKAAILLYHAVPDYY 263
AGLLASNADVYSNINATKDNGLTLFCPVDAAVDAFLPKYKNLTAKGKAAILLYHAVPDYY
Sbjct: 204 AGLLASNADVYSNINATKDNGLTLFCPVDAAVDAFLPKYKNLTAKGKAAILLYHAVPDYY 263
Query: 264 SLQLLKSNSGKVSTLATASVAKKDYSYDVSNDRDSVLLDTKVNSASVTATVKDADPLAVY 323
SLQLLKSNSGKVSTLATASVAKKDYSYDVSNDRDSVLLDTKVNSASVTATVKDADPLAVY
Sbjct: 264 SLQLLKSNSGKVSTLATASVAKKDYSYDVSNDRDSVLLDTKVNSASVTATVKDADPLAVY 323
Query: 324 AISKFLQPKELFKVTEDL 341
AISKFLQPKELFKVTEDL
Sbjct: 324 AISKFLQPKELFKVTEDL 341
>Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein
Length = 401
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/316 (68%), Positives = 262/316 (82%), Gaps = 2/316 (0%)
Query: 24 EGYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTL 83
+ YNITKIL HPE+S+FN++L++TRLA DINRR+TITVL V N M +L H+TLPT+
Sbjct: 27 KSYNITKILAAHPEFSKFNEMLSKTRLAYDINRRQTITVLAVDNSAMASLD--HFTLPTI 84
Query: 84 RHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAE 143
RHIL +HILVDYYG+KKLH L+ G TASSSMFQ +GSAPGTTGYVNIT H+GG++ F +E
Sbjct: 85 RHILSLHILVDYYGSKKLHALSHGATASSSMFQATGSAPGTTGYVNITSHKGGKIDFISE 144
Query: 144 DAADSATPSSFVKSVKEIPYDLAVLQISKPLSSXXXXXXXXXXXXXNLTELLSKKYCKNF 203
DA +SA PS +VKSVKEIPYD++VLQ+S LSS NLTELLSKKYCK+F
Sbjct: 145 DADESAKPSRYVKSVKEIPYDISVLQVSSVLSSSEAEAPVPPPAPVNLTELLSKKYCKSF 204
Query: 204 AGLLASNADVYSNINATKDNGLTLFCPVDAAVDAFLPKYKNLTAKGKAAILLYHAVPDYY 263
AGLLA+NADV+ +N TKDNGLTLFCPVDAAV AF+P YKNLTAK K AILLYHAVPDY+
Sbjct: 205 AGLLAANADVFRAVNETKDNGLTLFCPVDAAVAAFMPSYKNLTAKAKTAILLYHAVPDYF 264
Query: 264 SLQLLKSNSGKVSTLATASVAKKDYSYDVSNDRDSVLLDTKVNSASVTATVKDADPLAVY 323
SLQLLKSN+G V+TLATAS +KKDYSYDV N ++V LDT+V +++VTATV DA+PLAVY
Sbjct: 265 SLQLLKSNNGMVTTLATASESKKDYSYDVQNKGETVTLDTRVVNSAVTATVGDAEPLAVY 324
Query: 324 AISKFLQPKELFKVTE 339
A++KFL+PKEL+KV E
Sbjct: 325 AVTKFLKPKELYKVVE 340
>Os04g0574200 Beta-Ig-H3/fasciclin domain containing protein
Length = 431
Score = 194 bits (492), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 173/311 (55%), Gaps = 7/311 (2%)
Query: 26 YNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTLRH 85
+NIT IL +PEYS +N L++T++ +IN R T+T LV+ NG M +L + +L +++
Sbjct: 24 HNITDILDGYPEYSLYNSYLSQTKVCDEINSRSTVTCLVLTNGAMSSLVS-NLSLADIKN 82
Query: 86 ILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAEDA 145
L + L+DYY KKLH L+ G +++++Q +G A G G+VNIT RGG+V F A A
Sbjct: 83 ALRLLTLLDYYDTKKLHSLSDGSELTTTLYQTTGDASGNMGHVNITNLRGGKVGF-ASAA 141
Query: 146 ADSATPSSFVKSVKEIPYDLAVLQISKPLSSXXXXXXXXXXXXXNLTELLSKKYCKNFAG 205
S +++ KSVK+ PY+L+VL++S P+ + NLT LL K CK FA
Sbjct: 142 PGSKFQATYTKSVKQEPYNLSVLEVSDPI-TFPGLFDSPSAASTNLTALLEKAGCKQFAR 200
Query: 206 LLASNADVYSNINATKDNGLTLFCPVDAAVDA-FLPKYKNLTAKGKAAILLYHAVPDYYS 264
L+ S+ V A D LTLF P D A A LP LT+ +L YHA+P Y
Sbjct: 201 LIVSSG-VMKMYQAAMDKALTLFAPNDDAFQAKGLPDLSKLTSAELVTLLQYHALPQYAP 259
Query: 265 LQLLKSNSGKVSTLATASVAKKDYSYDVSNDRDSVLLDTKVNSASVTATVKDADPLAVYA 324
LK+ G + TLA+ K D S V D V +DT ++ + V +TV D P ++
Sbjct: 260 KASLKTIKGHIQTLASTGAGKYDLS--VVTKGDDVSMDTGMDKSRVASTVLDDTPTVIHT 317
Query: 325 ISKFLQPKELF 335
+ L P ELF
Sbjct: 318 VDSVLLPPELF 328
>Os09g0476800 Glutelin family protein
Length = 273
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 102/149 (68%), Gaps = 3/149 (2%)
Query: 190 NLTELLSKKYCKNFAGLLASNADVYSNINATKDNGLTLFCPVDAAVDAFLPKYKNLTAKG 249
N+T ++K CK FA L+A++ D S + G+T+FCP D AV AFLP+YKNLTA G
Sbjct: 46 NVTTAMAKGGCKAFADLIAASPDASSTYQSAAGGGITVFCPTDDAVRAFLPRYKNLTADG 105
Query: 250 KAAILLYHAVPDYYSLQLLKSNSGKVSTLATASVAKKDYSYDVSNDRDSVLLDTKV--NS 307
KA +LL+HAVP YYS LKSN+G ++TLAT A K+Y++ V N+ D+V + T ++
Sbjct: 106 KAELLLFHAVPVYYSRGSLKSNNGVMNTLATDGAA-KNYNFTVQNEGDAVTIKTAASGDA 164
Query: 308 ASVTATVKDADPLAVYAISKFLQPKELFK 336
A V +TV DADP+A++ + ++P ELFK
Sbjct: 165 ARVKSTVVDADPVAIFTVDAVIEPVELFK 193
>Os02g0726000 Beta-Ig-H3/fasciclin domain containing protein
Length = 266
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 94/151 (62%)
Query: 26 YNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTLRH 85
+NIT IL DH + ++F + LT T LA DI+ R TITVL V + M L LRH
Sbjct: 24 HNITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREALRH 83
Query: 86 ILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAEDA 145
+L +H+LVDYY KLH+L G S++FQ SG APG+ G V I RGGRV+F +D
Sbjct: 84 VLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAPGSEGMVKIAVRRGGRVAFVPQDV 143
Query: 146 ADSATPSSFVKSVKEIPYDLAVLQISKPLSS 176
D+ +VKSV E PY+++VLQ+S ++S
Sbjct: 144 DDARANVFYVKSVHEAPYNISVLQVSAVITS 174
>Os05g0459700 Beta-Ig-H3/fasciclin domain containing protein
Length = 472
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/328 (28%), Positives = 161/328 (49%), Gaps = 26/328 (7%)
Query: 25 GYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDM-------GALSGGH 77
G ++ +L P+ + F +LL + +A ++ R ++T+L V NG++ A SG
Sbjct: 39 GVDVAAVLAAFPDLAGFARLLASSPVARELAGRSSLTLLAVPNGNLPQSPSAYAAASGAD 98
Query: 78 YTLPTLRHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGR 137
L +L H+L++Y L +L +++FQ +G AP G VN+T G
Sbjct: 99 -----LADVLRYHVLLEYLAPADLRRLPASGKLVTTLFQTTGRAPADLGAVNVTAA-GPS 152
Query: 138 VSFTAEDAADSATPSSFVKSVKEIPYDLAVLQISK---PLSSXXXXXXXXXXXXXNLTEL 194
++ A + ++ + ++ +PY+L+VL + P N+T++
Sbjct: 153 LAVVRSPAPFPGSNATVLGAITAVPYNLSVLAVDGLIVPSGFDLAASESRPPAAVNITKV 212
Query: 195 LSKKYCKNFAGLLASNADVYSNINA-TKDNGLTLFCPVDAAVDAF--LP---KYKNLTAK 248
L+ N A + + V A + G+T+F P D DAF LP + ++L A+
Sbjct: 213 LADARAFNVAASMLEASGVADEFEADERGAGITVFAPTD---DAFAGLPAGDRLQSLPAE 269
Query: 249 GKAAILLYHAVPDYYSLQLLKSNSGKVS-TLATASVAKKDYSYDVSNDRDSVLLDTKVNS 307
KA +L +H + YY L L+S V TLAT ++ +++ SV +DT V
Sbjct: 270 RKAVVLRFHVLHSYYPLGSLESIVNPVQPTLATEFTQAGRFTLNITRANGSVAIDTGVVQ 329
Query: 308 ASVTATVKDADPLAVYAISKFLQPKELF 335
A++T TV D +P+AV+A+SK L PKE+F
Sbjct: 330 ATITRTVFDQNPVAVFAVSKVLLPKEMF 357
>Os01g0841100 Beta-Ig-H3/fasciclin domain containing protein
Length = 427
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 159/329 (48%), Gaps = 28/329 (8%)
Query: 25 GYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDM-------GALSGGH 77
G N+T L P ++ F +LL + +AG++ R ++T+L V N ++ A SG
Sbjct: 33 GVNVTAALAAFPSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRSPSAFAAASGAD 92
Query: 78 YTLPTLRHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGR 137
+ +L H+L++Y L +L +++FQ +G AP G VN+T GG
Sbjct: 93 -----IADVLRYHVLLEYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTV--GGN 145
Query: 138 VSFTAEDAAD-SATPSSFVKSVKEIPYDLAVLQISK---PLSSXXXXXXXXXXXXXNLTE 193
+ A + ++ + +V +PY+L+VL + P N+T
Sbjct: 146 STVVVRSPAPFPGSSATVLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITH 205
Query: 194 LLSKKYCKNFAGLLASNADVYSNINA-TKDNGLTLFCPVDAAVDAF--LP---KYKNLTA 247
+L+ N A + + V A + G+T+F P D DAF LP + ++L A
Sbjct: 206 VLADARGFNVAASMLEASGVADEFTADERGAGITVFVPTD---DAFADLPATDRLQSLPA 262
Query: 248 KGKAAILLYHAVPDYYSLQLLKSNSGKVS-TLATASVAKKDYSYDVSNDRDSVLLDTKVN 306
KA +L +H + YY L L+S V TLAT ++ +++ SV +DT +
Sbjct: 263 DRKATVLRFHVLHSYYPLGSLESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIV 322
Query: 307 SASVTATVKDADPLAVYAISKFLQPKELF 335
AS+T TV D +P+AV+A+SK L PKE+F
Sbjct: 323 QASITRTVFDQNPVAVFAVSKVLLPKEMF 351
>Os02g0461500 Beta-Ig-H3/fasciclin domain containing protein
Length = 304
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 98/153 (64%), Gaps = 9/153 (5%)
Query: 26 YNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPT--L 83
+NIT+ILG+ ++S FN LLT+T+LA +INRR+TITVL + NG G +S +LP+
Sbjct: 32 FNITRILGEFSDFSTFNHLLTQTKLADEINRRQTITVLALDNGAAGGVS----SLPSDEQ 87
Query: 84 RHILEMHILVDYYGAKKLHQLARGDTAS--SSMFQESGSAPGTTGYVNITQHRGGRVSFT 141
R +L +H+++DYY +KL + + ++ +++FQ SG A G++N T+ G + F
Sbjct: 88 RKVLSVHVVLDYYDTEKLGGMKMKNRSAVLTTLFQSSGQATDRMGFLNYTKRSDGIMVFG 147
Query: 142 AEDAADSATPSSFVKSVKEIPYDLAVLQISKPL 174
+ + AT S VK V PY+++VLQ++ P+
Sbjct: 148 SAEPGAQAT-SQMVKVVVTRPYNISVLQVNSPI 179
>Os08g0490600 Beta-Ig-H3/fasciclin domain containing protein
Length = 181
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 73/102 (71%), Gaps = 3/102 (2%)
Query: 237 AFLPKYKNLTAKGKAAILLYHAVPDYYSLQLLKSNSGKVSTLATASVAKKDYSYDVSNDR 296
AF+P YKNLTA GKA++LL+HAVP YYSL+ LKSN+G ++TLAT A K++++ V N+
Sbjct: 3 AFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSA-KNFNFTVQNEG 61
Query: 297 DSVLLDTKVNS--ASVTATVKDADPLAVYAISKFLQPKELFK 336
D V + T + A + TV D DP+A+YA+ L+P ELF+
Sbjct: 62 DKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE 103
>Os06g0656800 Beta-Ig-H3/fasciclin domain containing protein
Length = 269
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Query: 26 YNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLP--TL 83
+N+T+ILG PE+ F+ L+++T + DIN R T+TVLV N + L LP L
Sbjct: 39 FNVTEILGRFPEFGLFSYLISKTHVDRDINSRNTVTVLVPDNSAVDWLLRRSARLPRAAL 98
Query: 84 RHILEMHILVDYYGAKKLHQLARG-DTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTA 142
+L +H+++DY+ A K+ L G T S+++FQ +G+A TG++ IT G F A
Sbjct: 99 VELLSVHVVLDYFDAAKIAALPPGKPTVSTTLFQTTGNARRRTGFLAITPTAKGGAVF-A 157
Query: 143 EDAADSATPSSFVKSVKEIPYDLAVLQIS 171
A + ++ + V +PY+++VLQIS
Sbjct: 158 SAAPGALVNATLKRVVAAVPYNISVLQIS 186
>Os06g0285100
Length = 244
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 225 LTLFCPVDAAVDAFLPKYKNLTAKGKAAILLYHAVPDYYSLQLLKSNSGKVSTLAT-ASV 283
T+FCP D AV AF+P ++ LTA K A+LLYHAV ++S + LK+ +G+V+TLAT
Sbjct: 52 FTVFCPADDAVAAFIPAFRGLTADAKVALLLYHAVAAHFSEEALKAINGEVNTLATDGGG 111
Query: 284 AKKDYSYDVSNDRDSVLLDTKVNSAS-----VTATVKDADPLAVYAISKFLQPKEL 334
K + + D D K++S+S VT T++DADP AVY I L P ++
Sbjct: 112 GGKVLNLTIEEDDDGAGATVKLSSSSGNVARVTKTIQDADPHAVYLIDAVLMPLDV 167
>Os04g0283600
Length = 278
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 26 YNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLP--TL 83
+N+T+IL + PE+S FN LL++TRLA D+N R +TVLVV + GA++ +LP T
Sbjct: 29 FNVTEILHEFPEFSVFNGLLSQTRLAEDVNLRPAVTVLVVDDAAAGAIT----SLPEATQ 84
Query: 84 RHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGS--APGTTGYVNITQHRGGRVSFT 141
++ + +L+DYY KL+ L ++ + + + G G V TQ +++F
Sbjct: 85 GEVVALQVLLDYYDPVKLYSLKAKTALLPTLLRPTAAGGGGGGVGLVKYTQVADDQMAFG 144
Query: 142 AEDAADSATPSSFVKSVKEIPYDLAVLQISKPL 174
+ + + S VK V PY+L+V+Q+S P+
Sbjct: 145 SGEPG-APIGSQLVKVVACRPYNLSVMQVSAPI 176
>Os05g0563600 Beta-Ig-H3/fasciclin domain containing protein
Length = 272
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 190 NLTELLSK--KYCKNFAGLLASNADVYSNINATKD-NGLTLFCPVDAAVDAFLPKYKN-L 245
N+T +L K KY L S D N NGLT+F P DAA A P N L
Sbjct: 52 NVTAVLEKSGKYTTFLRLLHESRVDTQINSQLMDSYNGLTMFAPTDAAFAALKPGTLNSL 111
Query: 246 TAKGKAAILLYHAVPDYYSLQLLKSNSGKVSTLATASVAKKDYSYDVSNDRDSVLLDTKV 305
+++ + ++LY +P +YSL +L + G V+T AS A Y Y + ++V + T V
Sbjct: 112 SSQDQIQLMLYCVLPRFYSLAMLTTLGGPVNT--QASGADGPYKYKIKPSNNNVNISTGV 169
Query: 306 NSASVTATVKDADPLAVYAISKFLQPKELF 335
N A ++ V PLAVY++ K P ELF
Sbjct: 170 NWALLSTVVSKDFPLAVYSVDKVPLPYELF 199
>Os03g0128000 Hypothetical protein
Length = 163
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 24 EGYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALS-GGHYTLPT 82
G NIT +L +P+Y FNK L+ET++ +IN R +IT+LV+ +G M L +L
Sbjct: 25 RGLNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG 84
Query: 83 LRHILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVN 129
+++ L +H ++DY+ KK+ L D ++ E+G + G G V
Sbjct: 85 IKNALRLHAILDYFDPKKIRGLP--DAGRRAV--EAGGSQGNEGVVR 127
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,567,134
Number of extensions: 352854
Number of successful extensions: 757
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 14
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)