Os04g0574200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Beta-Ig-H3/fasciclin domain containing protein.
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Os04g0574200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Beta-Ig-H3/fasciclin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 317.23 | 0.837 | 3.78 | 1.83 | 1.05 | -0.821 | 0.859 | -8.31 | 0.242 | 19.6 | 31.72 | 943 | -- | -- |
| 332.92 | 0.85 | 3.84 | 1.05 | 1.02 | -1.35 | 1.4 | -- | 0.278 | 18.5 | 31.5 | 1122 | -- | -- |
| 319.11 | 0.832 | 3.77 | 1.78 | 1.02 | -0.886 | -- | -8.22 | 0.255 | 19.8 | 31.7 | 924 | -- | -- |
| 322.04 | 0.836 | 3.9 | 0.71 | 0.994 | -1.69 | -- | -- | 0.208 | 19.9 | 31.4 | 914 | -- | -- |
| 362.81 | 0.887 | 3.77 | 1.51 | -- | -1.44 | -- | -7.68 | 0.255 | -- | 31.39 | 806 | -- | -- |
| 420.38 | 0.961 | 3.97 | 1.1 | 1.31 | -- | 1.3 | -- | -0.018 | 20.1 | -- | -- | -- | -- |
| 425.43 | 0.966 | 3.97 | 1.07 | 1.3 | -- | -- | -- | -0.0179 | 20.2 | -- | -- | -- | -- |
| 365.54 | 0.89 | 3.87 | 0.672 | -- | -2.28 | -- | -- | 0.254 | -- | 31.37 | 806 | -- | -- |
| 334.39 | 0.852 | 3.91 | -- | 1 | -1.78 | -- | -- | 0.162 | 19.7 | 31.45 | 958 | -- | -- |
| 519.38 | 1.06 | 3.93 | 1.06 | -- | -- | -- | -- | -0.0327 | -- | -- | -- | -- | -- |
| 455.39 | 0.998 | 3.99 | -- | 1.3 | -- | -- | -- | -0.137 | 20.3 | -- | -- | -- | -- |
| 377.16 | 0.905 | 3.88 | -- | -- | -2.37 | -- | -- | 0.195 | -- | 31.38 | 809 | -- | -- |
| 548.84 | 1.09 | 3.96 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 322.51 | temperature | 30 | 720 | > th | dose independent | sin | 11 | NA |
| 2 | 322.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 10 | 324.58 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 36 | 327.50 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 16 |
| 37 | 327.50 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 18 |
| 38 | 327.76 | temperature | 25 | 720 | > th | dose dependent | sin | 17 | NA |
| 50 | 328.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 93 | 328.79 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 96 | 328.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 139 | 329.93 | temperature | 30 | 720 | > th | dose dependent | sin | 11 | NA |
| 141 | 329.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 151 | 330.18 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 154 | 330.22 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 189 | 330.34 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 15 |
| 232 | 330.49 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 9 |
| 384 | 330.84 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 21 |
| 399 | 330.99 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 424 | 331.13 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 473 | 331.57 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 22 |
| 478 | 331.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 527 | 332.08 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 13 |
| 556 | 332.21 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 8 |
| 631 | 332.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 635 | 332.78 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 20 |
| 636 | 332.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 688 | 333.14 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 743 | 333.44 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 18 |
| 751 | 333.54 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 23 |
| 757 | 333.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 758 | 333.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 759 | 333.64 | radiation | 30 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 795 | 333.87 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 10 |
| 821 | 334.08 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 8 |
| 950 | 335.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 954 | 335.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 955 | 335.07 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 956 | 335.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 974 | 335.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 978 | 335.18 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |