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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0726000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0227) R2 : 0.00439
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0677 (0.0477) R2dN8 : 0.00567 R2N8 : 0.00439
σ : 0.427
deviance : 83.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.39 0.421 2.94 -0.0848 0.283 0.259 -1.32 -1.46 0.0642 12.3 8.973 248 -- --
81.83 0.425 2.94 -0.131 0.102 -0.0692 -0.49 -- 0.0485 4.92 9.999 314 -- --
81.62 0.421 2.94 -0.125 0.243 0.227 -- -0.382 0.0643 12.2 12.31 250 -- --
82.13 0.425 2.94 -0.131 0.189 -0.184 -- -- 0.0502 1.74 12.31 250 -- --
81.84 0.421 2.94 -0.0896 -- 0.154 -- -0.768 0.0664 -- 3.045 810 -- --
82.14 0.425 2.94 -0.128 0.0978 -- -0.507 -- 0.0493 6.02 -- -- -- --
82.71 0.426 2.94 -0.131 0.1 -- -- -- 0.0516 7.27 -- -- -- --
82.6 0.423 2.94 -0.116 -- 0.157 -- -- 0.061 -- 1.83 981 -- --
82.59 0.426 2.94 -- 0.187 -0.185 -- -- 0.0647 1.72 12.31 250 -- --
83.24 0.426 2.94 -0.13 -- -- -- -- 0.0533 -- -- -- -- --
83.16 0.427 2.94 -- 0.0991 -- -- -- 0.0663 7.36 -- -- -- --
82.95 0.424 2.94 -- -- 0.164 -- -- 0.0739 -- 1.689 986 -- --
83.68 0.427 2.94 -- -- -- -- -- 0.0677 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.46 humidity 90.0 90 > th dose dependent rect. 8 1
3 66.64 humidity 90.0 90 > th dose independent rect. 8 1
5 67.62 wind 5.0 10 > th dose independent rect. 10 1
9 67.62 wind 5.0 10 > th dose dependent rect. 10 1
40 69.32 wind 9.0 90 > th dose dependent rect. 22 12
99 73.42 radiation 1.0 270 < th dose independent rect. 6 2
113 74.29 temperature 20.0 30 < th dose independent rect. 7 1
116 74.29 temperature 20.0 30 < th dose dependent rect. 7 1
152 75.16 radiation 1.0 30 < th dose dependent rect. 7 1
175 75.62 wind 9.0 90 > th dose independent rect. 19 15
207 76.02 radiation 20.0 30 < th dose independent rect. 7 1
210 76.13 wind 9.0 4320 < th dose independent rect. 24 8
212 76.21 atmosphere 1010.0 90 < th dose dependent rect. 7 2
225 76.37 temperature 25.0 30 > th dose independent rect. 20 3
235 76.48 wind 1.0 270 > th dose dependent rect. 6 1
257 76.63 temperature 25.0 30 > th dose dependent rect. 20 3
273 76.75 humidity 90.0 270 > th dose independent rect. 5 4
275 76.77 temperature 10.0 1440 > th dose independent rect. 24 8
278 76.77 temperature 30.0 1440 < th dose independent rect. 24 8
282 76.77 humidity 50.0 1440 > th dose independent rect. 24 8
287 76.77 atmosphere 995.0 1440 > th dose independent rect. 24 8
288 76.77 temperature 10.0 1440 > th dose independent rect. 8 16
291 76.78 precipitation 0.1 30 < th dose independent rect. 7 16
292 76.78 precipitation 0.1 30 < th dose dependent rect. 7 16
293 76.79 temperature 10.0 30 > th dose independent rect. 23 8
294 76.79 temperature 30.0 30 < th dose independent rect. 23 8
295 76.79 humidity 50.0 30 > th dose independent rect. 23 8
298 76.79 atmosphere 995.0 30 > th dose independent rect. 23 8
299 76.79 radiation 20.0 30 < th dose independent rect. 23 8
302 76.79 temperature 10.0 30 > th dose independent rect. 7 16
304 76.79 atmosphere 1015.0 30 < th dose independent rect. 7 16
305 76.80 wind 9.0 30 < th dose independent rect. 23 8
307 76.80 atmosphere 1010.0 10 < th dose dependent rect. 7 3
311 76.82 radiation 40.0 30 < th dose dependent rect. 23 8
312 76.83 precipitation 0.1 30 < th dose independent rect. 23 8
314 76.83 precipitation 0.1 30 < th dose dependent rect. 23 8
328 76.85 wind 1.0 30 > th dose independent rect. 7 16
339 76.87 wind 9.0 30 < th dose independent rect. 7 16
354 76.95 atmosphere 1005.0 10 > th dose dependent rect. 20 3
356 76.96 humidity 50.0 10 > th dose independent rect. 7 16
357 76.96 atmosphere 995.0 30 > th dose independent rect. 7 16
369 77.00 temperature 10.0 30 > th dose dependent rect. 23 8
384 77.07 humidity 50.0 30 > th dose dependent rect. 23 8
386 77.10 humidity 70.0 30 > th dose independent rect. 7 1
412 77.20 atmosphere 1005.0 10 < th dose independent rect. 7 3
419 77.23 humidity 80.0 30 > th dose independent rect. 20 3
435 77.30 radiation 10.0 10 < th dose independent rect. 23 11
440 77.31 wind 9.0 30 < th dose dependent rect. 23 8
460 77.38 radiation 40.0 30 < th dose dependent rect. 7 1
492 77.50 humidity 50.0 30 > th dose dependent rect. 7 1
508 77.56 atmosphere 1015.0 30 < th dose independent rect. 23 8
521 77.61 wind 5.0 10 < th dose independent rect. 7 1
614 77.87 wind 7.0 30 < th dose dependent rect. 7 1
626 77.92 wind 1.0 270 > th dose independent rect. 17 15
632 77.94 wind 1.0 30 > th dose independent rect. 7 1
653 78.00 temperature 25.0 30 > th dose independent rect. 7 1
654 78.00 temperature 15.0 1440 > th dose independent rect. 21 1
664 78.01 temperature 30.0 1440 < th dose independent rect. 21 1
668 78.01 humidity 50.0 1440 > th dose independent rect. 21 1
674 78.01 atmosphere 995.0 1440 > th dose independent rect. 21 1
675 78.01 radiation 1.0 1440 < th dose independent rect. 21 1
696 78.01 temperature 10.0 1440 > th dose independent rect. 22 23
699 78.01 radiation 30.0 1440 < th dose dependent rect. 21 1
704 78.02 temperature 30.0 30 < th dose independent rect. 7 16
706 78.02 radiation 10.0 1440 < th dose dependent rect. 21 1
718 78.05 wind 3.0 30 > th dose independent rect. 20 1
719 78.05 humidity 90.0 30 < th dose independent rect. 20 1
722 78.05 atmosphere 1005.0 30 > th dose dependent rect. 20 1
724 78.06 humidity 80.0 30 > th dose independent rect. 20 1
725 78.06 atmosphere 1005.0 30 > th dose independent rect. 20 1
733 78.07 wind 5.0 30 < th dose independent rect. 20 1
738 78.07 wind 1.0 30 > th dose dependent rect. 20 1
749 78.08 temperature 10.0 30 > th dose independent rect. 20 1
751 78.08 temperature 30.0 30 < th dose independent rect. 20 1
752 78.08 humidity 50.0 30 > th dose independent rect. 20 1
755 78.08 atmosphere 995.0 30 > th dose independent rect. 20 1
757 78.08 atmosphere 1010.0 30 < th dose independent rect. 20 1
759 78.08 radiation 1.0 30 < th dose independent rect. 20 1
764 78.08 precipitation 0.1 30 < th dose independent rect. 20 1
765 78.08 temperature 10.0 30 > th dose independent rect. 21 23
766 78.08 radiation 1.0 30 < th dose dependent rect. 20 1
772 78.08 precipitation 0.1 30 < th dose dependent rect. 20 1
775 78.09 radiation 20.0 90 < th dose independent rect. 6 4
777 78.09 wind 9.0 30 < th dose dependent rect. 20 1
778 78.09 humidity 50.0 30 > th dose dependent rect. 20 1
783 78.10 humidity 90.0 30 < th dose dependent rect. 20 1
800 78.13 atmosphere 1015.0 30 < th dose dependent rect. 20 1
808 78.15 radiation 10.0 10 < th dose independent rect. 23 21
809 78.15 temperature 30.0 30 < th dose dependent rect. 20 1
812 78.15 atmosphere 995.0 90 > th dose dependent rect. 23 7
819 78.17 wind 9.0 30 < th dose independent rect. 21 23
823 78.18 atmosphere 995.0 30 > th dose independent rect. 8 23
824 78.18 temperature 30.0 30 < th dose dependent rect. 7 1
828 78.19 wind 9.0 1440 < th dose independent rect. 8 1
831 78.19 temperature 10.0 1440 > th dose independent rect. 8 1
836 78.19 humidity 50.0 1440 > th dose independent rect. 8 1
838 78.19 atmosphere 995.0 1440 > th dose independent rect. 8 1
841 78.19 atmosphere 1015.0 1440 < th dose independent rect. 8 1
843 78.19 temperature 10.0 1440 > th dose independent rect. 9 23
875 78.22 temperature 10.0 30 > th dose independent rect. 7 1
877 78.22 temperature 30.0 30 < th dose independent rect. 7 1
878 78.22 humidity 50.0 30 > th dose independent rect. 7 1
880 78.22 atmosphere 995.0 30 > th dose independent rect. 7 1
881 78.22 atmosphere 1015.0 30 < th dose independent rect. 7 1
882 78.22 precipitation 0.1 30 < th dose independent rect. 7 1
896 78.22 radiation 40.0 1440 < th dose independent rect. 24 7
903 78.22 temperature 10.0 30 > th dose independent rect. 8 23
905 78.22 precipitation 0.1 30 < th dose dependent rect. 7 1
916 78.24 precipitation 0.1 1440 < th dose independent rect. 8 1
921 78.24 precipitation 0.1 1440 < th dose dependent rect. 8 1
925 78.25 radiation 30.0 10 < th dose independent rect. 7 4
927 78.25 precipitation 0.1 30 < th dose independent rect. 8 23
930 78.25 precipitation 0.1 30 < th dose dependent rect. 8 23
936 78.26 wind 7.0 4320 < th dose dependent rect. 3 2
966 78.27 temperature 30.0 90 < th dose dependent rect. 6 3
968 78.27 radiation 20.0 270 < th dose dependent rect. 17 15
979 78.28 radiation 1.0 10 > th dose independent rect. 7 1
981 78.28 wind 1.0 270 > th dose independent rect. 6 2
988 78.28 wind 1.0 4320 > th dose dependent rect. 3 2
991 78.29 atmosphere 1010.0 270 < th dose independent rect. 6 2