BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0726000 Os02g0726000|AK099178
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0726000 Beta-Ig-H3/fasciclin domain containing protein 394 e-110
Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein 139 1e-33
Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein 138 5e-33
Os04g0574200 Beta-Ig-H3/fasciclin domain containing protein 106 2e-23
Os02g0461500 Beta-Ig-H3/fasciclin domain containing protein 100 2e-21
Os06g0656800 Beta-Ig-H3/fasciclin domain containing protein 89 2e-18
Os05g0459700 Beta-Ig-H3/fasciclin domain containing protein 77 1e-14
Os01g0841100 Beta-Ig-H3/fasciclin domain containing protein 71 7e-13
Os04g0283600 70 2e-12
>Os02g0726000 Beta-Ig-H3/fasciclin domain containing protein
Length = 266
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/266 (77%), Positives = 207/266 (77%)
Query: 1 MPRARVVHVMLLLFVALGACRATHNITAILADHRDLAEFGRQLTATGLADDIDGRNTITV 60
MPRARVVHVMLLLFVALGACRATHNITAILADHRDLAEFGRQLTATGLADDIDGRNTITV
Sbjct: 1 MPRARVVHVMLLLFVALGACRATHNITAILADHRDLAEFGRQLTATGLADDIDGRNTITV 60
Query: 61 LAVDDAHMAQLRARGLPREALRHVLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAP 120
LAVDDAHMAQLRARGLPREALRHVLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAP
Sbjct: 61 LAVDDAHMAQLRARGLPREALRHVLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAP 120
Query: 121 GSEGMVKIAVRRGGRVAFVPQDVDDARANVFYVKSVHEAPYNISVLQVSAVIXXXXXXXX 180
GSEGMVKIAVRRGGRVAFVPQDVDDARANVFYVKSVHEAPYNISVLQVSAVI
Sbjct: 121 GSEGMVKIAVRRGGRVAFVPQDVDDARANVFYVKSVHEAPYNISVLQVSAVITSPAAEAP 180
Query: 181 XXXXXXKPNSTDASSKXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
KPNSTDASSK V
Sbjct: 181 SSATESKPNSTDASSKHGPPNAGAHAAPSPVGQGSSSDDGADEGKKSGDGGDGGKKNGAS 240
Query: 241 XXAAPRGLPFALAFLMAASAILVVNW 266
AAPRGLPFALAFLMAASAILVVNW
Sbjct: 241 VGAAPRGLPFALAFLMAASAILVVNW 266
>Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein
Length = 401
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 94/141 (66%), Gaps = 2/141 (1%)
Query: 23 THNITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREALR 82
++NIT ILA H + ++F L+ T LA DI+ R TITVLAVD++ MA L LP +R
Sbjct: 28 SYNITKILAAHPEFSKFNEMLSKTRLAYDINRRQTITVLAVDNSAMASLDHFTLP--TIR 85
Query: 83 HVLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAPGSEGMVKIAVRRGGRVAFVPQD 142
H+LSLH+LVDYY KLH L G+ S++FQA+G APG+ G V I +GG++ F+ +D
Sbjct: 86 HILSLHILVDYYGSKKLHALSHGATASSSMFQATGSAPGTTGYVNITSHKGGKIDFISED 145
Query: 143 VDDARANVFYVKSVHEAPYNI 163
D++ YVKSV E PY+I
Sbjct: 146 ADESAKPSRYVKSVKEIPYDI 166
>Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein
Length = 415
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 91/146 (62%)
Query: 24 HNITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREALRH 83
+NIT IL DH + ++F + LT T LA DI+ R TITVL V + M L LRH
Sbjct: 26 YNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALSGGHYTLPTLRH 85
Query: 84 VLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAPGSEGMVKIAVRRGGRVAFVPQDV 143
+L +H+LVDYY KLH+L G S++FQ SG APG+ G V I RGGRV+F +D
Sbjct: 86 ILEMHILVDYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAEDA 145
Query: 144 DDARANVFYVKSVHEAPYNISVLQVS 169
D+ +VKSV E PY+++VLQ+S
Sbjct: 146 ADSATPSSFVKSVKEIPYDLAVLQIS 171
>Os04g0574200 Beta-Ig-H3/fasciclin domain containing protein
Length = 431
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 24 HNITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREALRH 83
HNIT IL + + + + L+ T + D+I+ R+T+T L + + M+ L + L +++
Sbjct: 24 HNITDILDGYPEYSLYNSYLSQTKVCDEINSRSTVTCLVLTNGAMSSLVSN-LSLADIKN 82
Query: 84 VLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAPGSEGMVKIAVRRGGRVAFVPQDV 143
L L L+DYYD KLH L GS + +TL+Q +GDA G+ G V I RGG+V F
Sbjct: 83 ALRLLTLLDYYDTKKLHSLSDGSELTTTLYQTTGDASGNMGHVNITNLRGGKVGFA-SAA 141
Query: 144 DDARANVFYVKSVHEAPYNISVLQVSAVI 172
++ Y KSV + PYN+SVL+VS I
Sbjct: 142 PGSKFQATYTKSVKQEPYNLSVLEVSDPI 170
>Os02g0461500 Beta-Ig-H3/fasciclin domain containing protein
Length = 304
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 88/150 (58%), Gaps = 5/150 (3%)
Query: 25 NITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREALRHV 84
NIT IL + D + F LT T LAD+I+ R TITVLA+D+ + + LP + R V
Sbjct: 33 NITRILGEFSDFSTFNHLLTQTKLADEINRRQTITVLALDNGAAGGVSS--LPSDEQRKV 90
Query: 85 LSLHVLVDYYDDAKLH--RLPGGSAVVSTLFQASGDAPGSEGMVKIAVRRGGRVAFVPQD 142
LS+HV++DYYD KL ++ SAV++TLFQ+SG A G + R G + F +
Sbjct: 91 LSVHVVLDYYDTEKLGGMKMKNRSAVLTTLFQSSGQATDRMGFLNYTKRSDGIMVFGSAE 150
Query: 143 VDDARANVFYVKSVHEAPYNISVLQVSAVI 172
A+A VK V PYNISVLQV++ I
Sbjct: 151 -PGAQATSQMVKVVVTRPYNISVLQVNSPI 179
>Os06g0656800 Beta-Ig-H3/fasciclin domain containing protein
Length = 269
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 25 NITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQL--RARGLPREALR 82
N+T IL + F ++ T + DI+ RNT+TVL D++ + L R+ LPR AL
Sbjct: 40 NVTEILGRFPEFGLFSYLISKTHVDRDINSRNTVTVLVPDNSAVDWLLRRSARLPRAALV 99
Query: 83 HVLSLHVLVDYYDDAKLHRLPGGSAVVS-TLFQASGDAPGSEGMVKIAVRRGGRVAFVPQ 141
+LS+HV++DY+D AK+ LP G VS TLFQ +G+A G + I G F
Sbjct: 100 ELLSVHVVLDYFDAAKIAALPPGKPTVSTTLFQTTGNARRRTGFLAITPTAKGGAVFA-S 158
Query: 142 DVDDARANVFYVKSVHEAPYNISVLQVSAVI 172
A N + V PYNISVLQ+S +
Sbjct: 159 AAPGALVNATLKRVVAAVPYNISVLQISNFV 189
>Os05g0459700 Beta-Ig-H3/fasciclin domain containing protein
Length = 472
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 25 NITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREA--LR 82
++ A+LA DLA F R L ++ +A ++ GR+++T+LAV + ++ Q + L
Sbjct: 41 DVAAVLAAFPDLAGFARLLASSPVARELAGRSSLTLLAVPNGNLPQSPSAYAAASGADLA 100
Query: 83 HVLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAPGSEGMVKIAVRRGGRVAFVPQD 142
VL HVL++Y A L RLP +V+TLFQ +G AP G V + G +A V
Sbjct: 101 DVLRYHVLLEYLAPADLRRLPASGKLVTTLFQTTGRAPADLGAVNVTA-AGPSLAVVRSP 159
Query: 143 VDDARANVFYVKSVHEAPYNISVLQVSAVI 172
+N + ++ PYN+SVL V +I
Sbjct: 160 APFPGSNATVLGAITAVPYNLSVLAVDGLI 189
>Os01g0841100 Beta-Ig-H3/fasciclin domain containing protein
Length = 427
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 25/161 (15%)
Query: 25 NITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREA---- 80
N+TA LA A+F R L ++ +A ++ R+++T+LAV + + LPR
Sbjct: 35 NVTAALAAFPSFADFARLLESSPVAGELAARSSLTLLAVPNNN--------LPRSPSAFA 86
Query: 81 ------LRHVLSLHVLVDYYDDAKLHRLPGGSAVVSTLFQASGDAPGSEGMVKIAVRRGG 134
+ VL HVL++Y + L RLP +V+TLFQ +G AP G V + V GG
Sbjct: 87 AASGADIADVLRYHVLLEYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTV--GG 144
Query: 135 RVAFV---PQDVDDARANVFYVKSVHEAPYNISVLQVSAVI 172
V P + A V + +V PYN+SVL V +I
Sbjct: 145 NSTVVVRSPAPFPGSSATV--LGAVTAVPYNLSVLAVGGLI 183
>Os04g0283600
Length = 278
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 25 NITAILADHRDLAEFGRQLTATGLADDIDGRNTITVLAVDDAHMAQLRARGLPREALRHV 84
N+T IL + + + F L+ T LA+D++ R +TVL VDDA + + LP V
Sbjct: 30 NVTEILHEFPEFSVFNGLLSQTRLAEDVNLRPAVTVLVVDDAAAGAITS--LPEATQGEV 87
Query: 85 LSLHVLVDYYDDAKLHRLPGGSAVVSTLFQ--ASGDAPGSEGMVKIAVRRGGRVAFVPQD 142
++L VL+DYYD KL+ L +A++ TL + A+G G G+VK ++AF +
Sbjct: 88 VALQVLLDYYDPVKLYSLKAKTALLPTLLRPTAAGGGGGGVGLVKYTQVADDQMAFGSGE 147
Query: 143 VDDARANVFYVKSVHEAPYNISVLQVSAVI 172
A VK V PYN+SV+QVSA I
Sbjct: 148 -PGAPIGSQLVKVVACRPYNLSVMQVSAPI 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,663,765
Number of extensions: 244796
Number of successful extensions: 701
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 9
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)