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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0248100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.64 (0.133) R2 : 0.569
β1 : -9.35 (0.868) R2dD : 0.801 R2D : 0.00299
β2 : 0.843 (0.222) R2dC : 0.0132 R2C : -0.0494
β3 : 5.74 (0.45) R2dE : 0.502 R2E : 0.0252
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.5 (3.51) R2dD*E : 0.0852 R2D*E : -0.451
γ1 : -1.62 (0.244) R2dN8 : 0.0928 R2N8 : -0.0347
σ : 1.67
deviance : 1290.83
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_____
C
peak time of C : 9.03
E
wheather : temperature
threshold : 26.6
memory length : 1243
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.6
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1291.21 1.69 6.63 -9.56 0.775 5.74 1.01 -12.2 -1.59 8.46 26.81 1283 11.7 --
1314.53 1.69 6.26 -6.78 0.83 4.68 0.77 -- -0.971 9.74 26.6 1197 9.9 --
1290.83 1.67 6.64 -9.35 0.843 5.74 -- -11.5 -1.62 9.03 26.6 1243 11.6 --
1314.93 1.69 6.27 -6.66 0.797 4.73 -- -- -0.973 10.4 26.6 1184 9.32 --
1319.79 1.69 6.54 -8.67 -- 5.54 -- -9.32 -1.34 -- 26.6 1247 9.46 --
2149.73 2.17 6.29 -5.38 0.95 -- 3.09 -- -1.09 5.34 -- -- -- --
2172.72 2.18 6.29 -5.37 0.98 -- -- -- -1.1 5.78 -- -- -- --
1345.93 1.71 6.27 -6.56 -- 4.66 -- -- -0.932 -- 26.66 1234 8.7 --
2405.63 2.28 6.05 -- 0.766 3.76 -- -- -0.0183 9.85 27.33 1124 6.99 --
2222.55 2.2 6.31 -5.34 -- -- -- -- -1.08 -- -- -- -- --
2932.32 2.53 6.16 -- 0.899 -- -- -- -0.503 6.06 -- -- -- --
2435.31 2.3 6.08 -- -- 3.62 -- -- -0.063 -- 27.33 1170 6.87 --
2974.2 2.55 6.18 -- -- -- -- -- -0.485 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1335.29 temperature 25 1440 > th dose dependent rect. 15 2
5 1340.09 temperature 25 1440 > th dose dependent rect. 13 6
8 1342.71 temperature 25 1440 > th dose dependent rect. 13 10
17 1345.85 temperature 25 1440 > th dose dependent rect. 13 20
49 1351.73 temperature 25 1440 > th dose dependent sin 18 NA
104 1361.12 temperature 25 1440 > th dose dependent rect. 6 17
209 1367.70 temperature 25 1440 > th dose dependent rect. 20 23
217 1368.13 temperature 25 1440 > th dose dependent no NA NA
294 1383.42 temperature 30 1440 < th dose independent rect. 14 22
301 1386.97 temperature 30 1440 < th dose independent rect. 18 22
302 1387.10 temperature 30 1440 < th dose independent rect. 9 19
304 1387.17 temperature 30 1440 < th dose independent rect. 9 22
305 1387.21 temperature 30 1440 < th dose independent sin 16 NA
310 1387.32 temperature 30 1440 < th dose independent rect. 9 16
322 1387.76 temperature 30 1440 < th dose independent rect. 9 11
338 1389.17 temperature 30 1440 < th dose independent rect. 14 14
347 1389.38 temperature 30 1440 < th dose independent rect. 14 17
350 1389.53 temperature 30 1440 < th dose independent rect. 14 11
369 1390.39 temperature 30 1440 > th dose independent rect. 14 22
387 1391.95 temperature 30 1440 > th dose independent rect. 14 5
403 1392.11 temperature 30 1440 > th dose independent sin 14 NA
410 1392.44 temperature 30 1440 < th dose independent rect. 6 22
419 1392.65 temperature 30 1440 < th dose independent rect. 6 19
424 1392.70 temperature 30 1440 < th dose independent rect. 2 23
425 1392.72 temperature 30 1440 < th dose independent no NA NA
426 1392.72 temperature 30 1440 < th dose independent rect. 21 23
427 1392.73 temperature 30 1440 < th dose independent rect. 23 23
462 1393.07 temperature 30 1440 < th dose independent rect. 6 14
568 1396.83 temperature 30 1440 > th dose independent rect. 9 10
582 1397.33 temperature 30 1440 < th dose independent rect. 9 7
618 1399.04 temperature 30 1440 > th dose independent rect. 17 23
670 1402.97 temperature 30 1440 > th dose independent no NA NA
791 1404.01 temperature 30 1440 < th dose independent rect. 6 10
794 1404.11 temperature 30 1440 < th dose independent rect. 2 14