FiT-DB / Search/ Help/ Sample detail

Os01g0841100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0296) R2 : 0.43
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.4 (0.0773) R2dC : 0.411 R2C : 0.408
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.23 (0.0622) R2dN8 : 0.0222 R2N8 : 0.0189
σ : 0.557
deviance : 141.8
__
_____
C
peak time of C : 18.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.7 0.512 5.81 0.235 1.53 -0.44 -0.167 1.65 -0.163 19.6 10 10 -- --
131.35 0.538 5.82 0.139 1.55 -0.544 1.33 -- -0.195 20.1 10 10 -- --
119.96 0.514 5.81 0.222 1.53 -0.432 -- 1.56 -0.17 19.5 10 10 -- --
135.55 0.546 5.82 0.0988 1.51 -0.419 -- -- -0.198 19.5 10 10 -- --
229.91 0.706 5.79 0.107 -- -0.247 -- 1.6 -0.242 -- 24.49 15 -- --
141.33 0.557 5.82 0.08 1.4 -- 0.409 -- -0.224 18.5 -- -- -- --
141.65 0.557 5.82 0.0755 1.4 -- -- -- -0.222 18.4 -- -- -- --
238.75 0.723 5.8 0.022 -- -0.307 -- -- -0.265 -- 33.18 11 -- --
135.81 0.546 5.83 -- 1.51 -0.414 -- -- -0.21 19.5 10 10 -- --
243.34 0.729 5.79 0.0397 -- -- -- -- -0.251 -- -- -- -- --
141.8 0.557 5.82 -- 1.4 -- -- -- -0.23 18.4 -- -- -- --
238.76 0.722 5.8 -- -- -0.308 -- -- -0.268 -- 33.18 11 -- --
243.38 0.728 5.79 -- -- -- -- -- -0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.59 temperature 30.0 720 < th dose dependent rect. 23 9
5 111.12 temperature 30.0 720 < th dose dependent rect. 7 1
10 111.60 temperature 20.0 720 < th dose independent rect. 5 2
13 111.71 temperature 25.0 720 < th dose dependent rect. 3 5
18 112.12 temperature 25.0 720 < th dose dependent rect. 5 2
45 113.03 temperature 10.0 720 > th dose dependent rect. 19 11
47 113.11 temperature 20.0 720 < th dose independent rect. 3 4
65 113.58 temperature 10.0 720 > th dose dependent rect. 23 8
71 113.77 temperature 30.0 720 < th dose dependent sin 8 NA
89 114.15 temperature 10.0 720 > th dose dependent rect. 1 6
107 114.49 temperature 10.0 720 > th dose dependent rect. 3 4
149 115.38 temperature 25.0 270 < th dose independent rect. 6 6
224 116.80 radiation 20.0 720 < th dose independent rect. 23 8
238 117.08 humidity 70.0 720 > th dose independent rect. 23 8
264 117.35 radiation 1.0 90 < th dose dependent sin 10 NA
271 117.43 radiation 1.0 90 < th dose independent sin 10 NA
282 117.51 wind 9.0 720 < th dose independent rect. 19 16
315 117.97 temperature 10.0 720 > th dose dependent sin 12 NA
323 118.11 precipitation 0.1 720 < th dose independent rect. 19 16
325 118.11 precipitation 0.1 720 < th dose dependent rect. 19 16
331 118.18 precipitation 0.1 720 < th dose independent rect. 23 8
332 118.18 precipitation 0.1 720 < th dose dependent rect. 23 8
351 118.46 radiation 10.0 10 < th dose independent rect. 3 23
355 118.48 temperature 10.0 720 > th dose independent rect. 11 8
356 118.48 atmosphere 1015.0 720 < th dose independent rect. 11 8
357 118.48 temperature 10.0 720 > th dose independent rect. 19 16
358 118.48 atmosphere 995.0 720 > th dose independent rect. 19 16
361 118.51 humidity 50.0 720 > th dose independent rect. 19 16
370 118.60 temperature 20.0 720 < th dose independent rect. 24 13
379 118.68 temperature 30.0 30 < th dose dependent rect. 7 7
394 118.81 wind 9.0 720 < th dose independent rect. 23 8
397 118.83 temperature 10.0 720 > th dose independent rect. 23 8
398 118.83 temperature 30.0 720 < th dose independent rect. 23 8
399 118.83 humidity 50.0 720 > th dose independent rect. 23 8
401 118.83 atmosphere 995.0 720 > th dose independent rect. 23 8
403 118.83 temperature 10.0 720 > th dose independent rect. 7 16
430 119.02 radiation 10.0 10 < th dose independent rect. 5 23
434 119.06 temperature 20.0 720 < th dose independent sin 7 NA
477 119.35 radiation 10.0 10 < th dose independent rect. 19 17
486 119.46 radiation 10.0 10 < th dose independent rect. 1 23
493 119.52 temperature 25.0 270 < th dose independent rect. 13 17
494 119.52 precipitation 0.1 720 < th dose independent rect. 8 23
497 119.52 precipitation 0.1 720 < th dose dependent rect. 8 23
517 119.73 radiation 10.0 720 < th dose independent rect. 19 12
522 119.75 radiation 10.0 10 < th dose independent rect. 19 14
533 119.80 radiation 10.0 270 < th dose independent rect. 15 17
534 119.80 radiation 10.0 10 < th dose independent rect. 19 21
536 119.81 radiation 10.0 270 < th dose independent rect. 17 15
554 119.87 radiation 30.0 10 < th dose independent sin 7 NA
566 119.93 temperature 30.0 30 < th dose dependent rect. 7 12
572 119.98 radiation 1.0 90 < th dose dependent rect. 20 23
587 120.12 radiation 30.0 10 < th dose independent rect. 19 16
590 120.13 radiation 10.0 10 < th dose independent rect. 15 21
597 120.15 humidity 80.0 90 > th dose independent rect. 20 9
625 120.29 temperature 10.0 720 > th dose dependent rect. 12 19
633 120.32 temperature 15.0 720 > th dose independent rect. 19 1
639 120.33 radiation 20.0 90 < th dose independent rect. 19 14
649 120.37 radiation 10.0 10 < th dose independent rect. 19 23
655 120.39 precipitation 0.1 270 < th dose independent rect. 17 14
657 120.39 precipitation 0.1 270 < th dose dependent rect. 17 14
665 120.42 radiation 10.0 10 < th dose independent rect. 10 23
681 120.49 radiation 10.0 10 < th dose independent rect. 15 18
687 120.51 radiation 10.0 10 < th dose independent rect. 17 23
694 120.53 temperature 15.0 30 > th dose independent rect. 19 12
717 120.64 radiation 10.0 10 < th dose independent rect. 23 23
722 120.66 atmosphere 1015.0 720 < th dose dependent rect. 19 1
735 120.70 radiation 10.0 10 < th dose independent no NA NA
738 120.70 radiation 10.0 270 < th dose independent rect. 11 21
772 120.83 radiation 10.0 10 < th dose independent rect. 5 21
779 120.86 temperature 20.0 720 > th dose independent rect. 5 2
783 120.87 humidity 50.0 30 > th dose independent rect. 7 12
785 120.89 radiation 10.0 10 < th dose independent sin 6 NA
813 121.02 temperature 30.0 30 < th dose independent rect. 7 12
814 121.03 wind 7.0 720 < th dose independent rect. 19 1
815 121.03 atmosphere 1000.0 720 > th dose independent rect. 7 1
822 121.06 wind 9.0 10 < th dose dependent rect. 14 17
823 121.07 wind 1.0 720 > th dose independent rect. 19 1
831 121.09 radiation 1.0 270 > th dose independent rect. 7 10
834 121.10 temperature 15.0 720 > th dose independent rect. 19 12
836 121.11 precipitation 0.1 720 < th dose independent rect. 19 1
840 121.11 precipitation 0.1 720 < th dose dependent rect. 19 1
856 121.18 wind 7.0 720 < th dose independent rect. 7 1
861 121.19 temperature 30.0 720 < th dose independent rect. 19 1
862 121.19 humidity 50.0 720 > th dose independent rect. 19 1
863 121.19 atmosphere 995.0 720 > th dose independent rect. 19 1
864 121.19 atmosphere 1015.0 720 < th dose independent rect. 19 1
865 121.19 radiation 1.0 720 < th dose independent rect. 19 1
872 121.19 temperature 10.0 720 > th dose independent rect. 20 23
873 121.19 radiation 1.0 720 < th dose dependent rect. 19 1
888 121.24 wind 7.0 10 < th dose independent rect. 14 17
895 121.27 temperature 15.0 270 > th dose independent rect. 17 14
898 121.28 temperature 15.0 720 > th dose independent rect. 19 7
904 121.29 wind 9.0 270 < th dose independent rect. 17 14
911 121.30 atmosphere 995.0 720 > th dose independent rect. 20 23
918 121.32 temperature 10.0 720 > th dose independent rect. 7 1
921 121.32 humidity 50.0 720 > th dose independent rect. 7 1
924 121.32 atmosphere 1015.0 720 < th dose independent rect. 7 1
928 121.32 temperature 10.0 720 > th dose independent rect. 8 23
929 121.33 precipitation 0.1 720 < th dose independent rect. 7 1
933 121.33 precipitation 0.1 720 < th dose dependent rect. 7 1
934 121.33 radiation 1.0 90 < th dose dependent rect. 19 13
937 121.34 precipitation 0.1 30 < th dose independent rect. 19 12
940 121.34 precipitation 0.1 30 < th dose dependent rect. 19 12
951 121.37 radiation 30.0 270 < th dose dependent rect. 15 16
959 121.39 radiation 1.0 90 > th dose independent sin 8 NA
965 121.40 temperature 10.0 270 > th dose independent rect. 7 10
966 121.40 atmosphere 1015.0 270 < th dose independent rect. 7 10
967 121.40 temperature 10.0 30 > th dose independent rect. 7 12
970 121.40 temperature 30.0 30 < th dose independent rect. 19 12
971 121.40 humidity 50.0 30 > th dose independent rect. 19 12
973 121.40 atmosphere 995.0 30 > th dose independent rect. 19 12
974 121.40 atmosphere 1015.0 30 < th dose independent rect. 7 12
984 121.41 radiation 10.0 720 < th dose independent rect. 21 9
985 121.41 wind 9.0 30 < th dose independent rect. 19 12
992 121.42 precipitation 0.1 30 < th dose independent rect. 7 12
993 121.42 precipitation 0.1 30 < th dose dependent rect. 7 12
995 121.43 wind 1.0 30 > th dose independent rect. 7 12
1000 121.45 precipitation 0.1 270 < th dose independent rect. 7 10