BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0841100 Os01g0841100|AK119375
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0841100 Beta-Ig-H3/fasciclin domain containing protein 659 0.0
Os05g0459700 Beta-Ig-H3/fasciclin domain containing protein 500 e-141
Os04g0574200 Beta-Ig-H3/fasciclin domain containing protein 130 2e-30
Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein 118 8e-27
Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein 96 4e-20
Os05g0163300 Similar to Arabinogalactan protein-like 87 3e-17
Os01g0668100 Similar to Arabinogalactan-like protein 82 6e-16
Os09g0482780 Beta-Ig-H3/fasciclin domain containing protein 80 3e-15
Os08g0502400 Beta-Ig-H3/fasciclin domain containing protein 75 7e-14
Os09g0476800 Glutelin family protein 75 9e-14
Os05g0563550 Beta-Ig-H3/fasciclin domain containing protein 70 3e-12
Os04g0472200 Beta-Ig-H3/fasciclin domain containing protein 69 7e-12
Os06g0656800 Beta-Ig-H3/fasciclin domain containing protein 67 3e-11
>Os01g0841100 Beta-Ig-H3/fasciclin domain containing protein
Length = 427
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/371 (91%), Positives = 339/371 (91%)
Query: 43 FPSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRXXXXXXXXXXXXXXDVLRYHVL 102
FPSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPR DVLRYHVL
Sbjct: 43 FPSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRSPSAFAAASGADIADVLRYHVL 102
Query: 103 LEYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSAT 162
LEYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSAT
Sbjct: 103 LEYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSAT 162
Query: 163 VLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITHVLADARGFNVAASMLEA 222
VLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITHVLADARGFNVAASMLEA
Sbjct: 163 VLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITHVLADARGFNVAASMLEA 222
Query: 223 SGVADEFTADERGAGITVFVPTDDAFADLPATDRLQSLPADRKATVLRFHVLHSYYPLGS 282
SGVADEFTADERGAGITVFVPTDDAFADLPATDRLQSLPADRKATVLRFHVLHSYYPLGS
Sbjct: 223 SGVADEFTADERGAGITVFVPTDDAFADLPATDRLQSLPADRKATVLRFHVLHSYYPLGS 282
Query: 283 LESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVAVFAVS 342
LESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVAVFAVS
Sbjct: 283 LESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVAVFAVS 342
Query: 343 KVLLPKEMFGRGGXXXXXXXXXXXXXXXXXXENVRTPPTRLSSPPALRGGADSESSSALS 402
KVLLPKEMFGRGG ENVRTPPTRLSSPPALRGGADSESSSALS
Sbjct: 343 KVLLPKEMFGRGGADSDVMAPPPDAMAPDAAENVRTPPTRLSSPPALRGGADSESSSALS 402
Query: 403 TARAVNWWCIR 413
TARAVNWWCIR
Sbjct: 403 TARAVNWWCIR 413
>Os05g0459700 Beta-Ig-H3/fasciclin domain containing protein
Length = 472
Score = 500 bits (1287), Expect = e-141, Method: Compositional matrix adjust.
Identities = 272/379 (71%), Positives = 294/379 (77%), Gaps = 10/379 (2%)
Query: 43 FPSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRXXXXXXXXXXXXXXDVLRYHVL 102
FP A FARLL SSPVA ELA RSSLTLLAVPN NLP+ DVLRYHVL
Sbjct: 49 FPDLAGFARLLASSPVARELAGRSSLTLLAVPNGNLPQSPSAYAAASGADLADVLRYHVL 108
Query: 103 LEYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSAT 162
LEYL+P+DL RLPASGKLVTTLFQTTGRAP+DLGAVN+T G S VVRSPAPFPGS+AT
Sbjct: 109 LEYLAPADLRRLPASGKLVTTLFQTTGRAPADLGAVNVTAAGPSLAVVRSPAPFPGSNAT 168
Query: 163 VLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITHVLADARGFNVAASMLEA 222
VLGA+TAVPYNLSVLAV GLIVPSG D+AAS+SRP VNIT VLADAR FNVAASMLEA
Sbjct: 169 VLGAITAVPYNLSVLAVDGLIVPSGFDLAASESRPPAAVNITKVLADARAFNVAASMLEA 228
Query: 223 SGVADEFTADERGAGITVFVPTDDAFADLPATDRLQSLPADRKATVLRFHVLHSYYPLGS 282
SGVADEF ADERGAGITVF PTDDAFA LPA DRLQSLPA+RKA VLRFHVLHSYYPLGS
Sbjct: 229 SGVADEFEADERGAGITVFAPTDDAFAGLPAGDRLQSLPAERKAVVLRFHVLHSYYPLGS 288
Query: 283 LESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVAVFAVS 342
LESIVNPVQPTLATE +AG+FTLNITR NGSVAIDTG+VQA+ITRTVFDQNPVAVFAVS
Sbjct: 289 LESIVNPVQPTLATEFTQAGRFTLNITRANGSVAIDTGVVQATITRTVFDQNPVAVFAVS 348
Query: 343 KVLLPKEMFGRGGXXXXXXXXXXXXXXXXXXENVRTPPTRLSSPPALRGGADSESSSALS 402
KVLLPKEMF R E+ + PT+LSSPPALR A + + +A +
Sbjct: 349 KVLLPKEMFSR-SDSAIVAVASAPPPAALPAESPESAPTKLSSPPALRDTAGNANHTAAA 407
Query: 403 TARA---------VNWWCI 412
A A + WCI
Sbjct: 408 AAVAAAAATTKPTIGRWCI 426
>Os04g0574200 Beta-Ig-H3/fasciclin domain containing protein
Length = 431
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 149/309 (48%), Gaps = 13/309 (4%)
Query: 43 FPSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRXXXXXXXXXXXXXXDVLRYHVL 102
+P ++ + L + V E+ +RS++T L + N + + LR L
Sbjct: 33 YPEYSLYNSYLSQTKVCDEINSRSTVTCLVLTNGAM---SSLVSNLSLADIKNALRLLTL 89
Query: 103 LEYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSAT 162
L+Y L L +L TTL+QTTG A ++G VN+T V S AP AT
Sbjct: 90 LDYYDTKKLHSLSDGSELTTTLYQTTGDASGNMGHVNITNLRGGKVGFASAAPGSKFQAT 149
Query: 163 VLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITHVLADARGFNVAASMLEA 222
+V PYNLSVL V I GL DS A N+T +L A G A ++ +
Sbjct: 150 YTKSVKQEPYNLSVLEVSDPITFPGL----FDSPSAASTNLTALLEKA-GCKQFARLIVS 204
Query: 223 SGVADEFTADERGAGITVFVPTDDAFADLPATDRLQSLPADRKATVLRFHVLHSYYPLGS 282
SGV + A A +T+F P DDAF D L L + T+L++H L Y P S
Sbjct: 205 SGVMKMYQAAMDKA-LTLFAPNDDAFQAKGLPD-LSKLTSAELVTLLQYHALPQYAPKAS 262
Query: 283 LESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVAVFAVS 342
L++I +Q TLA+ AG++ L++ V++DTG+ ++ + TV D P + V
Sbjct: 263 LKTIKGHIQ-TLASTG--AGKYDLSVVTKGDDVSMDTGMDKSRVASTVLDDTPTVIHTVD 319
Query: 343 KVLLPKEMF 351
VLLP E+F
Sbjct: 320 SVLLPPELF 328
>Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein
Length = 415
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 154/313 (49%), Gaps = 18/313 (5%)
Query: 44 PSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRXXXXXXXXXXXXXXDVLRYHVLL 103
P ++ F +LL + +AG++ R ++T+L V N ++ +L H+L+
Sbjct: 36 PEYSQFNKLLTETRLAGDINRRRTITVLVVANGDM--GALSGGHYTLPTLRHILEMHILV 93
Query: 104 EYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTV--GGNSTVVVRSPAPFPGSSA 161
+Y L +L +++FQ +G AP G VN+T GG + A + +
Sbjct: 94 DYYGAKKLHQLARGDTASSSMFQESGSAPGTTGYVNITQHRGGRVSFTAEDAAD-SATPS 152
Query: 162 TVLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITHVLADARGFNVAASMLE 221
+ + +V +PY+L+VL + P A + P VN+T +L+ N A +
Sbjct: 153 SFVKSVKEIPYDLAVLQISK---PLSSPEAEAPVAPPAPVNLTELLSKKYCKNFAGLLAS 209
Query: 222 ASGVADEFTADERGAGITVFVPTD---DAFADLPATDRLQSLPADRKATVLRFHVLHSYY 278
+ V A + G+T+F P D DAF LP + ++L A KA +L +H + YY
Sbjct: 210 NADVYSNINA-TKDNGLTLFCPVDAAVDAF--LP---KYKNLTAKGKAAILLYHAVPDYY 263
Query: 279 PLGSLESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVAV 338
L L+S V TLAT ++ +++ SV +DT + AS+T TV D +P+AV
Sbjct: 264 SLQLLKSNSGKVS-TLATASVAKKDYSYDVSNDRDSVLLDTKVNSASVTATVKDADPLAV 322
Query: 339 FAVSKVLLPKEMF 351
+A+SK L PKE+F
Sbjct: 323 YAISKFLQPKELF 335
>Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein
Length = 401
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 155/314 (49%), Gaps = 22/314 (7%)
Query: 44 PSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRXXXXXXXXXXXXXXDVLRYHVLL 103
P F+ F +L + +A ++ R ++T+LAV N+ + +L H+L+
Sbjct: 39 PEFSKFNEMLSKTRLAYDINRRQTITVLAVDNSAM----ASLDHFTLPTIRHILSLHILV 94
Query: 104 EYLSPSDLARLPASGKLVTTLFQTTGRAPSDLGAVNLTV-GGNSTVVVRSPAPFPGSSAT 162
+Y L L +++FQ TG AP G VN+T G + A +
Sbjct: 95 DYYGSKKLHALSHGATASSSMFQATGSAPGTTGYVNITSHKGGKIDFISEDADESAKPSR 154
Query: 163 VLGAVTAVPYNLSVLAVGGLIVPSGLDVAASDSRPAGGVNITHVLAD--ARGFNVAASML 220
+ +V +PY++SVL V ++ S A + P VN+T +L+ + F A +L
Sbjct: 155 YVKSVKEIPYDISVLQVSSVLSSS---EAEAPVPPPAPVNLTELLSKKYCKSF---AGLL 208
Query: 221 EASGVADEFTA--DERGAGITVFVPTDDAFAD-LPATDRLQSLPADRKATVLRFHVLHSY 277
A+ AD F A + + G+T+F P D A A +P+ ++L A K +L +H + Y
Sbjct: 209 AAN--ADVFRAVNETKDNGLTLFCPVDAAVAAFMPS---YKNLTAKAKTAILLYHAVPDY 263
Query: 278 YPLGSLESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVA 337
+ L L+S N + TLAT ++ ++ +V +DT +V +++T TV D P+A
Sbjct: 264 FSLQLLKS-NNGMVTTLATASESKKDYSYDVQNKGETVTLDTRVVNSAVTATVGDAEPLA 322
Query: 338 VFAVSKVLLPKEMF 351
V+AV+K L PKE++
Sbjct: 323 VYAVTKFLKPKELY 336
>Os05g0163300 Similar to Arabinogalactan protein-like
Length = 275
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 8/155 (5%)
Query: 203 ITHVLADARGFNVAASMLEASGVADEFTADERG-----AGITVFVPTDDAFADLPATDRL 257
IT +L A F +L+++ ++ +G G+TVF P D+AFA LP T L
Sbjct: 54 ITAILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSGGLTVFAPPDNAFAALP-TGTL 112
Query: 258 QSLPADRKATVLRFHVLHSYYPLGSLESIVNPVQPTLATERFEAGQFTLNITRVNGSVAI 317
L +K ++++FHV+ + P+ +++ NP++ T A E AG++ LN+T V I
Sbjct: 113 NKLSDQQKTSLVQFHVVSALLPMAQFDTVSNPLR-TQAGET-AAGKYPLNVTAEGSRVNI 170
Query: 318 DTGIVQASITRTVFDQNPVAVFAVSKVLLPKEMFG 352
TG+V A++ T++ + + V+ V KVLLP ++G
Sbjct: 171 STGVVNATVDNTLYSGDRLVVYQVDKVLLPWALYG 205
>Os01g0668100 Similar to Arabinogalactan-like protein
Length = 247
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 234 RGAGITVFVPTDDAFADL-PATDRLQSLPADRKATVLRFHVLHSYYPLGSLESIVNPVQP 292
G G TVF PTD+AF +L P T L SL ++ +++ HVL +Y + S ++ NPV+
Sbjct: 73 NGNGYTVFAPTDNAFNNLKPGT--LNSLTQQQQVALVQGHVLPQFYSMDSFQTASNPVRT 130
Query: 293 TLATERFEAGQFTLNITRV-NGSVAIDTGIVQASITRTVFDQNPVAVFAVSKVLLPKEMF 351
+ G +TLNIT N +V + TG+V+ ++T + P+AV++V KVLLP E+F
Sbjct: 131 QASGTD---GPYTLNITSTTNNNVNVSTGVVEVTVTNALSAVKPLAVYSVDKVLLPFELF 187
Query: 352 GRGGXXXXXXXXXXXXXXXXXXENVRTPPTRLSSPPALRGGADSESSSALSTARAVNW 409
G + + T +S PA G D+E + A S ARAV W
Sbjct: 188 G--------VKAPAAAPTASTAKPKKGGSTEAASGPA--GAEDAEPTGAAS-ARAVGW 234
>Os09g0482780 Beta-Ig-H3/fasciclin domain containing protein
Length = 240
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 87/157 (55%), Gaps = 11/157 (7%)
Query: 201 VNITHVLADARGFNVAASMLEASGVADEFT--ADERGAGITVFVPTDDAFADLPATDRLQ 258
V++ +L+ A F+ + LE + V + F A++ G+T+FVP D AFA + +
Sbjct: 66 VDLAELLSVAGPFHTFLNYLEKTNVIETFQSQANKTKEGVTIFVPKDSAFAAIKQST-FS 124
Query: 259 SLPADRKATVLRFHVLHSYYPLGSLESI--VNPVQPTLATERFEAGQFTLNITRVNGSVA 316
+L D+ T+L +H +Y L +++ +NPV F +TLN+T G+++
Sbjct: 125 NLTGDQLKTLLLYHAFPKFYSLAEFKNLSELNPVN------TFAGAPYTLNLTDDMGTIS 178
Query: 317 IDTGIVQASITRTVFDQNPVAVFAVSKVLLPKEMFGR 353
+ + + I+ +V+ PVAV+A++KVLLP ++F +
Sbjct: 179 VQSMWSRPKISSSVYATRPVAVYALNKVLLPMQIFSK 215
>Os08g0502400 Beta-Ig-H3/fasciclin domain containing protein
Length = 274
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 12/156 (7%)
Query: 201 VNITHVLADARGFNVAASMLEASGVADEFTADERGA--GITVFVPTDDAFADLPATDRLQ 258
V++ +L+ A F+ +LE + V F + G+ GITVFVP D AFA L A
Sbjct: 52 VDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDAAFASL-ARSATA 110
Query: 259 SLPADRKATVLRFHVLHSYYPLGSLESI---VNPVQPTLATERFEAGQFTLNITRVNGSV 315
+L +D+ ++ +H L YY L + +PV PTLA G++T+N+T G+V
Sbjct: 111 NLTSDQLKSLALYHALPRYYSLAEFNRLGGAASPV-PTLA-----GGEYTVNVTDDMGTV 164
Query: 316 AIDTGIVQASITRTVFDQNPVAVFAVSKVLLPKEMF 351
+ + I+ +V+ PVAV+ V +VLLP ++F
Sbjct: 165 HVGSMWSNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
>Os09g0476800 Glutelin family protein
Length = 273
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 202 NITHVLADARGFNVAASMLEASGVADEFTADERGAGITVFVPTDDAF-ADLPATDRLQSL 260
N+T +A G A ++ AS A G GITVF PTDDA A LP R ++L
Sbjct: 46 NVTTAMAKG-GCKAFADLIAASPDASSTYQSAAGGGITVFCPTDDAVRAFLP---RYKNL 101
Query: 261 PADRKATVLRFHVLHSYYPLGSLESIVNPVQPTLATERFEAGQFTLNITRVNGSVAIDTG 320
AD KA +L FH + YY GSL+S N V TLAT+ A + + +V I T
Sbjct: 102 TADGKAELLLFHAVPVYYSRGSLKSN-NGVMNTLATDG-AAKNYNFTVQNEGDAVTIKTA 159
Query: 321 IV--QASITRTVFDQNPVAVFAVSKVLLPKEMF 351
A + TV D +PVA+F V V+ P E+F
Sbjct: 160 ASGDAARVKSTVVDADPVAIFTVDAVIEPVELF 192
>Os05g0563550 Beta-Ig-H3/fasciclin domain containing protein
Length = 251
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 9/156 (5%)
Query: 201 VNITHVLADARGFNVAASMLEASGVADEFTADERGA--GITVFVPTDDAFADL-PATDRL 257
+N+T +L + +++++ + + G G TVF PTD AF+ L P T L
Sbjct: 42 LNVTAILEKGGSYTTFIRLMKSTQQDTQLNSQLNGTSTGFTVFAPTDGAFSSLKPGT--L 99
Query: 258 QSLPADRKATVLRFHVLHSYYPLGSLESIVNPVQPTLATERFEAGQFTLNITRVN-GSVA 316
SL A + ++++ H++ +Y + + ++ NPV+ + G +TLNIT + V
Sbjct: 100 NSLSAQDQVSLVQAHIVPKFYSMDAFDTASNPVRTQASGGD---GPYTLNITATSTNQVN 156
Query: 317 IDTGIVQASITRTVFDQNPVAVFAVSKVLLPKEMFG 352
+ TG+V ++ + P+AV++V KVLLP +FG
Sbjct: 157 VSTGVVDTTLGTALRADQPLAVYSVDKVLLPYALFG 192
>Os04g0472200 Beta-Ig-H3/fasciclin domain containing protein
Length = 272
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 201 VNITHVLADARGFNVAASMLEASGVADEFT--ADERGAG---ITVFVPTDDAFADLPATD 255
V++ +L+ A + L +GV F A++ AG +TVF P D AFA +
Sbjct: 54 VDLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGA 113
Query: 256 RLQSLPADRKATVLRFHVLHSYYPLGSLESIV-NPVQPTLATERFEAGQFTLNITRVNGS 314
L +L AD+ T++ H + Y+PL S ++ + PT A + Q+ +N+T G+
Sbjct: 114 ALSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQ----QYAVNVTDAAGT 169
Query: 315 VAIDTGIVQASITRTVFDQNPVAVFAVSKVLLPKEMF 351
V I +G A + +V+ +PVAV+A+++VLLP+++F
Sbjct: 170 VRIQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
>Os06g0656800 Beta-Ig-H3/fasciclin domain containing protein
Length = 269
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Query: 43 FPSFADFARLLESSPVAGELAARSSLTLLAVPNNNLPRXXXXXXXXXXXXXXDVLRYHVL 102
FP F F+ L+ + V ++ +R+++T+L N+ + ++L HV+
Sbjct: 48 FPEFGLFSYLISKTHVDRDINSRNTVTVLVPDNSAVDWLLRRSARLPRAALVELLSVHVV 107
Query: 103 LEYLSPSDLARLPASGKLV-TTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSA 161
L+Y + +A LP V TTLFQTTG A G + +T V S AP +A
Sbjct: 108 LDYFDAAKIAALPPGKPTVSTTLFQTTGNARRRTGFLAITPTAKGGAVFASAAPGALVNA 167
Query: 162 TVLGAVTAVPYNLSVLAVGGLIVP 185
T+ V AVPYN+SVL + +VP
Sbjct: 168 TLKRVVAAVPYNISVLQISNFVVP 191
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,607,683
Number of extensions: 485359
Number of successful extensions: 1509
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1484
Number of HSP's successfully gapped: 17
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)