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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0163300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Arabinogalactan protein-like.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0748) R2 : 0.525
β1 : -3.81 (0.282) R2dD : 0.225 R2D : 0.0728
β2 : 1.71 (0.177) R2dC : 0.0977 R2C : 0.0532
β3 : -2.73 (0.302) R2dE : 0.126 R2E : -0.0705
β4 : 3.72 (0.706) R2dD*C : 0.0293 R2D*C : 0.00385
β5 : 12.6 (1.1) R2dD*E : 0.189 R2D*E : -0.118
γ1 : -2.44 (0.169) R2dN8 : 0.35 R2N8 : 0.0145
σ : 1.36
deviance : 839.61
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_____
C
peak time of C : 9.53
E
wheather : wind
threshold : 3.059
memory length : 4315
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.12
open length of G : 0.983

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
839.61 1.36 5.54 -3.81 1.71 -2.73 3.72 12.6 -2.44 9.53 3.059 4315 6.12 0.983
1095.75 1.54 5.72 -3.6 1.77 -2.39 3.83 -- -2.43 9.54 2.65 3342 5.91 0.933
890.7 1.39 5.53 -3.7 1.69 -2.79 -- 12.9 -2.46 9.47 3.07 4314 6.12 0.987
1122.57 1.56 5.81 -3.02 1.73 -2.42 -- -- -2.42 9.81 2.306 4320 5.98 0.68
1058.99 1.52 5.57 -3.74 -- -2.59 -- 12.5 -2.39 -- 3.012 4313 6.12 0.976
1128.42 1.57 5.62 -3.4 1.57 -- 4.26 -- -1.75 9.48 -- -- -- --
1195.02 1.62 5.61 -3.25 1.56 -- -- -- -1.74 9.43 -- -- -- --
1269.87 1.66 5.79 -2.78 -- -2.07 -- -- -2.31 -- 2.243 4322 6 0.667
1303.52 1.68 5.78 -- 1.7 -2.58 -- -- -2.25 9.43 2.305 4342 5.98 0.683
1337.1 1.71 5.66 -3.26 -- -- -- -- -1.74 -- -- -- -- --
1472.82 1.8 5.53 -- 1.56 -- -- -- -1.38 9.58 -- -- -- --
1455.17 1.78 5.79 -- -- -3.15 -- -- -2.3 -- 2.208 4342 6 0.583
1616.73 1.88 5.57 -- -- -- -- -- -1.38 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 850.20 wind 3.0 4320 < th dose dependent rect. 6 1
3 860.58 wind 9.0 4320 < th dose dependent rect. 6 1
5 864.87 wind 3.0 4320 < th dose independent rect. 5 4
6 866.11 wind 3.0 4320 > th dose independent rect. 5 4
7 867.69 wind 1.0 4320 > th dose dependent rect. 6 1
9 871.11 wind 5.0 4320 < th dose dependent rect. 5 4
16 878.19 wind 3.0 4320 < th dose independent rect. 6 1
24 883.84 wind 1.0 4320 > th dose dependent rect. 5 4
37 888.29 wind 3.0 14400 > th dose independent rect. 8 1
53 892.83 wind 1.0 14400 < th dose independent rect. 24 3
54 892.86 wind 1.0 14400 > th dose independent rect. 24 3
64 894.24 wind 5.0 14400 < th dose dependent rect. 22 2
81 897.84 wind 5.0 14400 < th dose dependent rect. 8 1
89 898.54 precipitation 0.1 14400 > th dose independent rect. 11 2
90 898.54 precipitation 0.1 14400 > th dose dependent rect. 11 2
121 903.59 wind 1.0 14400 > th dose dependent rect. 22 2
141 906.73 wind 3.0 14400 < th dose dependent rect. 22 12
145 907.21 wind 9.0 14400 > th dose independent rect. 23 2
156 908.99 humidity 90.0 14400 > th dose dependent rect. 12 2
173 910.44 wind 3.0 14400 < th dose independent rect. 22 2
174 910.56 wind 9.0 14400 > th dose dependent rect. 23 2
177 910.74 wind 3.0 14400 < th dose dependent rect. 19 14
193 912.06 wind 3.0 14400 > th dose independent rect. 22 1
201 912.49 wind 1.0 14400 > th dose dependent rect. 8 1
213 913.58 wind 3.0 14400 < th dose independent rect. 22 13
216 913.79 wind 3.0 14400 < th dose dependent rect. 15 18
245 915.56 precipitation 0.1 14400 < th dose independent rect. 11 2
246 915.56 precipitation 0.1 14400 < th dose dependent rect. 11 2
262 916.18 wind 3.0 14400 > th dose independent rect. 22 13
265 916.28 wind 3.0 14400 < th dose dependent sin 9 NA
273 916.56 wind 3.0 14400 < th dose independent sin 5 NA
300 917.46 wind 3.0 14400 < th dose independent rect. 22 17
330 918.47 wind 3.0 14400 > th dose independent sin 5 NA
334 918.68 wind 3.0 14400 < th dose independent rect. 18 16
352 919.22 wind 3.0 14400 > th dose independent rect. 18 16
364 919.52 wind 3.0 14400 > th dose independent rect. 22 17
397 920.40 wind 3.0 14400 < th dose dependent rect. 22 18
418 920.93 wind 3.0 14400 < th dose dependent rect. 22 4
471 922.18 wind 1.0 14400 < th dose dependent rect. 5 23
503 922.77 wind 3.0 14400 < th dose dependent rect. 1 15
511 922.86 wind 1.0 14400 > th dose independent rect. 14 19
608 924.85 wind 1.0 14400 < th dose independent sin 13 NA
649 925.80 wind 7.0 14400 < th dose independent rect. 21 1
652 925.82 wind 9.0 14400 < th dose independent rect. 23 1
664 926.19 wind 7.0 14400 > th dose independent rect. 21 1
721 927.15 humidity 90.0 4320 > th dose dependent rect. 16 1
825 929.04 wind 1.0 14400 < th dose dependent rect. 1 23
826 929.05 wind 1.0 14400 < th dose independent rect. 14 14
840 929.29 wind 9.0 14400 < th dose independent rect. 22 3
843 929.36 radiation 40.0 14400 > th dose independent rect. 7 1
859 929.36 radiation 40.0 14400 > th dose dependent rect. 7 1
876 929.46 wind 1.0 14400 > th dose independent sin 13 NA
928 930.42 humidity 90.0 14400 < th dose independent rect. 3 2
971 931.12 wind 3.0 14400 < th dose dependent no NA NA