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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0472200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0247) R2 : 0.0129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.127 (0.052) R2dN8 : 0.0166 R2N8 : 0.0129
σ : 0.465
deviance : 99.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.13 0.453 3.19 0.0383 0.0634 -0.419 0.19 1.63 0.125 7.63 1.1 16 -- --
95.4 0.455 3.17 0.103 0.0755 -0.303 0.18 -- 0.142 7.77 1.069 16 -- --
93.21 0.45 3.19 0.0439 0.069 -0.409 -- 1.61 0.125 6.56 1.08 16 -- --
95.43 0.455 3.17 0.109 0.0878 -0.287 -- -- 0.142 6.33 1.099 16 -- --
93.44 0.45 3.19 0.04 -- -0.443 -- 1.65 0.126 -- 1.059 16 -- --
97.21 0.462 3.17 0.144 0.161 -- -0.0548 -- 0.139 5.27 -- -- -- --
97.21 0.462 3.17 0.144 0.161 -- -- -- 0.139 5.39 -- -- -- --
95.79 0.456 3.17 0.106 -- -0.329 -- -- 0.144 -- 1.074 16 -- --
95.74 0.456 3.18 -- 0.0858 -0.303 -- -- 0.13 6.36 1.098 16 -- --
98.56 0.464 3.17 0.15 -- -- -- -- 0.143 -- -- -- -- --
97.76 0.463 3.18 -- 0.163 -- -- -- 0.123 5.36 -- -- -- --
96.08 0.457 3.18 -- -- -0.343 -- -- 0.133 -- 1.035 16 -- --
99.15 0.465 3.18 -- -- -- -- -- 0.127 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.17 wind 1.0 30 < th dose independent rect. 2 1
2 78.21 wind 3.0 30 < th dose dependent rect. 2 1
6 78.27 atmosphere 1015.0 30 < th dose dependent rect. 2 1
7 78.29 temperature 25.0 30 < th dose independent rect. 2 1
9 78.31 atmosphere 1005.0 30 > th dose dependent rect. 2 1
13 78.33 temperature 10.0 30 > th dose independent rect. 2 1
16 78.33 humidity 50.0 30 > th dose independent rect. 2 1
19 78.33 atmosphere 995.0 30 > th dose independent rect. 2 1
20 78.33 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 78.33 radiation 1.0 30 < th dose independent rect. 2 1
27 78.33 precipitation 0.1 30 < th dose independent rect. 2 1
28 78.33 temperature 10.0 30 > th dose independent rect. 3 23
29 78.33 radiation 1.0 30 < th dose dependent rect. 2 1
34 78.33 precipitation 0.1 30 < th dose dependent rect. 2 1
35 78.34 temperature 10.0 30 > th dose dependent rect. 2 1
36 78.34 humidity 50.0 30 > th dose dependent rect. 2 1
43 78.41 temperature 30.0 30 < th dose dependent rect. 2 1
47 78.44 atmosphere 995.0 30 > th dose dependent rect. 2 1
51 78.51 atmosphere 1005.0 30 > th dose independent rect. 2 1
57 78.69 wind 9.0 30 < th dose independent rect. 3 23
96 79.00 wind 1.0 30 > th dose independent rect. 2 1
108 81.71 atmosphere 995.0 30 > th dose independent rect. 3 23
111 82.44 precipitation 0.1 30 < th dose independent rect. 3 23
112 82.44 precipitation 0.1 30 < th dose dependent rect. 3 23
128 84.45 radiation 1.0 43200 < th dose dependent rect. 3 1
137 84.96 wind 9.0 1440 < th dose independent rect. 3 1
138 84.96 temperature 10.0 1440 > th dose independent rect. 3 1
141 84.96 temperature 30.0 1440 < th dose independent rect. 3 1
145 84.96 humidity 50.0 1440 > th dose independent rect. 3 1
154 84.96 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 84.96 radiation 1.0 1440 < th dose independent rect. 3 1
175 84.96 temperature 10.0 1440 > th dose independent rect. 4 23
178 84.96 radiation 1.0 1440 < th dose dependent rect. 3 1
194 85.50 humidity 50.0 30 > th dose independent rect. 3 23
199 85.85 temperature 10.0 720 > th dose independent rect. 15 8
200 85.85 temperature 10.0 720 > th dose independent rect. 23 16
202 86.01 temperature 10.0 720 > th dose independent rect. 3 8
203 86.01 atmosphere 995.0 720 > th dose independent rect. 3 8
204 86.01 temperature 10.0 720 > th dose independent rect. 11 16
208 86.16 wind 9.0 720 < th dose independent rect. 3 8
214 86.47 radiation 40.0 720 < th dose independent rect. 15 8
217 86.53 atmosphere 1015.0 720 < th dose independent rect. 3 8
226 86.93 atmosphere 1015.0 30 < th dose independent rect. 3 23
259 87.18 humidity 50.0 720 > th dose independent rect. 3 8
260 87.19 precipitation 0.1 720 < th dose independent rect. 15 8
261 87.19 precipitation 0.1 720 < th dose dependent rect. 15 8
264 87.39 atmosphere 995.0 720 > th dose independent rect. 23 16
266 87.44 humidity 90.0 90 < th dose independent rect. 2 1
280 88.02 precipitation 0.1 720 < th dose independent rect. 11 16
281 88.02 precipitation 0.1 720 < th dose dependent rect. 11 16
286 88.20 precipitation 0.1 720 < th dose independent rect. 3 8
287 88.20 precipitation 0.1 720 < th dose dependent rect. 3 8
293 88.42 wind 9.0 720 < th dose independent rect. 15 8
298 88.64 temperature 25.0 270 > th dose independent rect. 22 5
307 88.95 precipitation 0.1 720 < th dose independent rect. 23 16
308 88.95 precipitation 0.1 720 < th dose dependent rect. 23 16
311 89.02 wind 9.0 720 < th dose independent rect. 23 16
313 89.14 wind 9.0 30 < th dose dependent rect. 3 23
317 89.35 atmosphere 995.0 720 > th dose independent rect. 11 16
319 89.40 atmosphere 995.0 720 > th dose independent rect. 15 8
349 89.63 wind 1.0 30 > th dose dependent rect. 2 1
364 89.90 wind 1.0 10 < th dose independent rect. 14 13
365 89.91 wind 7.0 90 > th dose independent rect. 1 8
367 89.92 wind 7.0 90 > th dose dependent rect. 1 8
368 89.93 wind 7.0 90 > th dose dependent rect. 8 1
370 89.94 wind 7.0 90 > th dose independent rect. 8 1
371 89.94 wind 1.0 10 < th dose independent rect. 17 10
377 89.95 atmosphere 1015.0 1440 < th dose independent rect. 3 1
387 89.97 wind 1.0 10 < th dose independent rect. 21 6
412 90.15 temperature 10.0 30 > th dose dependent rect. 3 23
427 90.33 temperature 25.0 270 > th dose dependent rect. 22 5
438 90.46 wind 9.0 720 < th dose independent rect. 11 16
442 90.52 wind 1.0 720 > th dose independent rect. 15 8
444 90.54 radiation 10.0 10 < th dose independent rect. 3 23
461 90.70 wind 3.0 30 < th dose dependent rect. 22 5
471 90.78 wind 1.0 10 > th dose independent rect. 23 23
507 91.07 radiation 20.0 30 < th dose dependent rect. 3 23
512 91.11 temperature 30.0 30 < th dose independent rect. 3 23
517 91.15 temperature 20.0 30 > th dose dependent rect. 3 4
567 91.33 radiation 40.0 90 < th dose dependent rect. 13 14
570 91.34 radiation 40.0 90 < th dose independent rect. 13 14
572 91.34 temperature 20.0 720 > th dose dependent rect. 3 1
574 91.34 humidity 50.0 30 > th dose dependent rect. 3 23
602 91.44 wind 3.0 30 < th dose dependent rect. 13 14
605 91.46 temperature 25.0 720 > th dose independent rect. 3 5
612 91.47 wind 9.0 30 < th dose dependent rect. 3 10
615 91.48 temperature 10.0 720 > th dose dependent rect. 3 1
633 91.57 wind 3.0 30 < th dose dependent rect. 15 12
657 91.69 temperature 20.0 90 > th dose independent rect. 3 4
662 91.72 atmosphere 1015.0 720 < th dose independent rect. 23 16
666 91.74 wind 3.0 30 < th dose independent rect. 3 9
672 91.75 humidity 70.0 720 > th dose dependent rect. 3 1
679 91.79 humidity 50.0 720 > th dose independent rect. 23 16
686 91.83 wind 9.0 30 < th dose dependent rect. 15 12
730 91.93 temperature 25.0 720 > th dose dependent rect. 3 5
736 91.95 temperature 20.0 30 > th dose dependent rect. 22 5
737 91.96 wind 1.0 10 > th dose independent sin 16 NA
738 91.96 wind 1.0 10 > th dose independent rect. 16 15
740 91.96 wind 9.0 30 < th dose dependent rect. 13 14
776 92.07 wind 9.0 30 < th dose dependent rect. 3 12
810 92.13 radiation 20.0 270 > th dose dependent rect. 6 1
856 92.24 wind 7.0 90 < th dose independent rect. 15 12
864 92.26 radiation 20.0 270 > th dose independent rect. 6 1
879 92.27 wind 1.0 10 > th dose independent rect. 23 8
883 92.28 humidity 90.0 720 > th dose independent rect. 3 1
884 92.29 wind 1.0 10 > th dose independent rect. 14 17
907 92.35 radiation 40.0 90 > th dose dependent rect. 8 1
930 92.37 humidity 80.0 90 > th dose independent rect. 3 4
945 92.40 radiation 40.0 90 < th dose independent rect. 7 20
953 92.41 atmosphere 995.0 30 > th dose dependent rect. 3 23
963 92.45 wind 1.0 10 > th dose independent rect. 10 21
969 92.46 temperature 25.0 10 < th dose dependent rect. 8 2
987 92.49 atmosphere 995.0 90 > th dose independent rect. 3 12