BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0472200 Os04g0472200|AK110545
(272 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04780.1 | chr2:1677488-1678252 FORWARD LENGTH=255 178 2e-45
AT5G60490.1 | chr5:24325916-24326665 REVERSE LENGTH=250 86 1e-17
AT1G03870.1 | chr1:982625-983368 REVERSE LENGTH=248 79 3e-15
AT5G44130.1 | chr5:17761128-17761871 FORWARD LENGTH=248 74 6e-14
AT2G20520.1 | chr2:8840663-8841406 FORWARD LENGTH=248 72 3e-13
AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421 70 2e-12
AT5G03170.1 | chr5:752898-753638 REVERSE LENGTH=247 70 2e-12
AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423 67 1e-11
AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421 62 3e-10
AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404 60 2e-09
AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425 57 7e-09
>AT2G04780.1 | chr2:1677488-1678252 FORWARD LENGTH=255
Length = 254
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 128/213 (60%), Gaps = 8/213 (3%)
Query: 52 RHVDLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGG 111
+V+L ELLS+AGP+ TFL YL TGVI TFQ+QAN+T G +T+F P+D AF A
Sbjct: 43 ENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEG---ITIFVPKDDAFKA-QK 98
Query: 112 GAALSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQQYAVNVTDAAGTVR 171
LSNLT DQL+ L+L H +P Y+ LS F L+ SGP TFAGGQ Y++ TD +GTVR
Sbjct: 99 NPPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFAGGQ-YSLKFTDVSGTVR 157
Query: 172 IQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIFXXXXXXXXXXXXXXXXXHGDKANDG 231
I S W K+ SSV+ST PVAVY +NRVLLPE IF +D
Sbjct: 158 IDSLWTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFGTDVPPMPAPAPAPIVS---APSDS 214
Query: 232 APGAGELGASDVKSSSCRVGAGRLLAILAVMVS 264
A GAS KSS G LLA +++++S
Sbjct: 215 PSVADSEGASSPKSSHKNSGQKLLLAPISMVIS 247
>AT5G60490.1 | chr5:24325916-24326665 REVERSE LENGTH=250
Length = 249
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 55 DLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGAA 114
++ ++L AG + F+ L TGV Q N++ G +T+FAP DS+F + G
Sbjct: 39 NVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNG---ITIFAPSDSSFTGLKAGT- 94
Query: 115 LSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQ---QYAVNVTDAAGTVR 171
L++LT +Q L+ H +P Y S+F + S P T AG + +NVT + TV
Sbjct: 95 LNSLTDEQQVELIQFHVIPSYVSSSNFQTI--SNPLRTQAGDSADGHFPLNVTTSGNTVN 152
Query: 172 IQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
I SG + +VYS +AVY +++VLLP+Q+F
Sbjct: 153 ITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187
>AT1G03870.1 | chr1:982625-983368 REVERSE LENGTH=248
Length = 247
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Query: 54 VDLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGA 113
++L +L G + TF+ L T V + Q N ++ G +TVFAP D+AF + G
Sbjct: 38 INLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEG---MTVFAPTDNAFQNLKPGT 94
Query: 114 ALSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQQ---YAVNVTDAAGTV 170
L+ L+ D L+L H P+Y+ + L+ S P T A G+ Y +N T +
Sbjct: 95 -LNQLSPDDQVKLILYHVSPKYYSMDDL--LSVSNPVRTQASGRDNGVYGLNFTGQTNQI 151
Query: 171 RIQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
+ +G+ ++ +S+ P+AVY ++ VLLP ++F
Sbjct: 152 NVSTGYVETRISNSLRQQRPLAVYVVDMVLLPGEMF 187
>AT5G44130.1 | chr5:17761128-17761871 FORWARD LENGTH=248
Length = 247
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 10/157 (6%)
Query: 54 VDLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGA 113
+++ +L G + T + L T + Q N ++ G +TV AP D+AF + G
Sbjct: 35 INITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEG---MTVLAPTDNAFQNLKPGT 91
Query: 114 ALSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQQ----YAVNVTDAAGT 169
L+ L+ D L+L H P+++ L L+ S P T A G+ Y +N T
Sbjct: 92 -LNKLSPDDQVKLILYHVSPKFYTLEDL--LSVSNPVRTQASGRDVGGVYGLNFTGQGNQ 148
Query: 170 VRIQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
V + +G +L +S+ P+AVY ++ VLLPE++F
Sbjct: 149 VNVSTGVVETRLSTSLRQERPLAVYVVDMVLLPEEMF 185
>AT2G20520.1 | chr2:8840663-8841406 FORWARD LENGTH=248
Length = 247
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 11/158 (6%)
Query: 54 VDLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGA 113
++L +L + T + L T V Q N + G +T+FAP D+AF + G
Sbjct: 37 INLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQG---MTIFAPTDNAFNKLKPGT 93
Query: 114 ALSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQQ---YAVNVTDAA--G 168
L++LT Q LML H +P+Y+ LS L AS P T A GQ + +N T A
Sbjct: 94 -LNSLTYQQQIQLMLYHIIPKYYSLSDL--LLASNPVRTQATGQDGGVFGLNFTGQAQSN 150
Query: 169 TVRIQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
V + +G ++ +++ P+AVY ++ VLLPE++F
Sbjct: 151 QVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELF 188
>AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421
Length = 420
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 13/159 (8%)
Query: 54 VDLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGA 113
++L ++L + L L +GVIT F+ ND G+TVF P DSAF+ +
Sbjct: 206 INLTQILINGHNFNVALSLLVASGVITEFE---NDERGA--GITVFVPTDSAFSDLPSNV 260
Query: 114 ALSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPA-PTFA----GGQQYAVNVTDAAG 168
L +L A+Q ++ H + Y+ L S ++ + P PT A G Y +N++ G
Sbjct: 261 NLQSLPAEQKAFVLKFHVLHSYYTLGSLESI--TNPVQPTLATEEMGAGSYTLNISRVNG 318
Query: 169 T-VRIQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
+ V I SG A + + + +PV+V+ +++VLLP+++F
Sbjct: 319 SIVTINSGVVLAVVTQTAFDQNPVSVFGVSKVLLPKELF 357
>AT5G03170.1 | chr5:752898-753638 REVERSE LENGTH=247
Length = 246
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 55 DLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGAA 114
++ +L AG + F+ L T +Q N +++ G+TVFAP D+AF ++ G
Sbjct: 36 NITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSN--GLTVFAPTDNAFNSLKSGT- 92
Query: 115 LSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAG-GQ--QYAVNVTDAAGTVR 171
L++L+ Q L+ H +P + F + S P T AG GQ ++ +N+T + V
Sbjct: 93 LNSLSDQQKVQLVQFHVLPTLITMPQFQTV--SNPLRTQAGDGQNGKFPLNITSSGNQVN 150
Query: 172 IQSGWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
I +G +A + +SVYS +AVY +++VLLP +F
Sbjct: 151 ITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 185
>AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423
Length = 422
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 8/152 (5%)
Query: 55 DLAELLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGAA 114
++ LL AG TF L +GVI TF+S G+TVFAP D AF A G
Sbjct: 190 NITGLLEKAG-CKTFANLLVSSGVIKTFESTVEK------GLTVFAPSDEAFKA-RGVPD 241
Query: 115 LSNLTADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQQYAVNVTDAAGTVRIQS 174
L+NLT ++ +L+ H + Y P S + G +Y + + + V + +
Sbjct: 242 LTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGKYDLTTSTSGDEVILHT 301
Query: 175 GWATAKLVSSVYSTSPVAVYALNRVLLPEQIF 206
G ++L +V +PV ++ ++ VLLP ++F
Sbjct: 302 GVGPSRLADTVVDETPVVIFTVDNVLLPAELF 333
>AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421
Length = 420
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query: 59 LLSLAGPYGTFLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGAALSNL 118
LL AG TF L +GV+ T++S A G+TVFAP D AF A G L+ L
Sbjct: 193 LLEKAG-CKTFANLLVSSGVLKTYES------AVEKGLTVFAPSDEAFKA-EGVPDLTKL 244
Query: 119 TADQLRTLMLCHGVPRYHPLSSFSALAASGPAPTFAGGQQYAVNVTDAAGTVRIQSGWAT 178
T ++ +L+ H + Y P S + G ++ + + + V + +G A
Sbjct: 245 TQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAP 304
Query: 179 AKLVSSVYSTSPVAVYALNRVLLPEQIF 206
++L +V +PV ++ ++ VLLP ++F
Sbjct: 305 SRLADTVLDATPVVIFTVDNVLLPAELF 332
>AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404
Length = 403
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 69 FLGYLTKTGVITTFQSQANDTAAGAPGVTVFAPEDSA---FAAVGGGAALSNLTADQLRT 125
F L TG TFQ DT G G+TVF P DSA F + +N TA
Sbjct: 203 FSDILKSTGADKTFQ----DTVDG--GLTVFCPSDSAVGKFMPKFKSLSPANKTA----- 251
Query: 126 LMLCHGVPRYHPLSSFSALAASGPAPTFA--GGQQYAVNVTDAAGTVRIQSGWATAKLVS 183
L+L HG+P Y L + +G T A G ++ V + V +++ TAK++
Sbjct: 252 LVLYHGMPVYQSLQMLRS--GNGAVNTLATEGNNKFDFTVQNDGEDVTLETDVVTAKVMG 309
Query: 184 SVYSTSPVAVYALNRVLLPEQIFXXXXXXXXXXXXXXXXXHGDKANDGAPGAGELGASDV 243
++ P+ VY +++VLLP +I+ +A+ P A DV
Sbjct: 310 TLKDQEPLIVYKIDKVLLPREIYKAVKTSAPAPKSSKKKPKNAEADADGPSADAPSDDDV 369
Query: 244 KSSSCRVGA 252
+ + + GA
Sbjct: 370 EVADDKNGA 378
>AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425
Length = 424
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 73 LTKTGVITTFQSQANDTAAGAPGVTVFAPEDSAFAAVGGGAALSNLTADQLRTLMLCHGV 132
LT G T+Q G+TVF P D A G NLTA + + V
Sbjct: 204 LTNPGASKTYQESLEG------GMTVFCPGDDAMK--GFLPKYKNLTAPKKEAFLDFLAV 255
Query: 133 PRYHPLSSFSALAASGPAPTFA--GGQQYAVNVTDAAGTVRIQSGWATAKLVSSVYSTSP 190
P Y+ ++ + +GP T A G ++ + V + V +++ T K+V ++ P
Sbjct: 256 PTYYSMAMLKS--NNGPMNTLATDGANKFELTVQNDGEKVTLKTRINTVKIVDTLIDEQP 313
Query: 191 VAVYALNRVLLPEQIF 206
+A+YA ++VLLP+++F
Sbjct: 314 LAIYATDKVLLPKELF 329
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,268,224
Number of extensions: 143244
Number of successful extensions: 322
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 11
Length of query: 272
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 175
Effective length of database: 8,447,217
Effective search space: 1478262975
Effective search space used: 1478262975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)