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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0502400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0596) R2 : 0.36
β1 : -1.32 (0.22) R2dD : 0.0536 R2D : 0.00156
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.54 (0.229) R2dE : 0.349 R2E : 0.283
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.569 (0.129) R2dN8 : 0.0385 R2N8 : -0.014
σ : 1.11
deviance : 570.15
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.49
memory length : 244
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.6
open length of G : 14.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
553.37 1.11 4.04 -1.98 0.637 4.16 -0.716 -5.42 -0.749 9.98 20.11 281 14 13
563.56 1.11 3.98 -1.46 0.903 4.05 0.348 -- -0.59 10.5 18.31 252 14.5 12.8
554.51 1.1 4.03 -1.95 0.609 4.17 -- -4.85 -0.744 9.62 20.4 283 14 13.1
563.89 1.11 3.96 -1.43 0.954 4.09 -- -- -0.58 10.4 18.16 259 14.4 12.7
560.07 1.1 4.02 -1.93 -- 3.87 -- -4.82 -0.691 -- 21.52 254 14.4 14.1
769.45 1.3 3.94 -0.852 1.34 -- 0.13 -- -0.23 20.4 -- -- -- --
769.5 1.3 3.94 -0.856 1.34 -- -- -- -0.23 20.4 -- -- -- --
570.15 1.11 3.98 -1.32 -- 3.54 -- -- -0.569 -- 21.49 244 14.6 14.6
611.76 1.15 3.94 -- 0.404 3.53 -- -- -0.401 10.2 20.28 251 14.5 12.8
869.79 1.38 3.91 -0.863 -- -- -- -- -0.244 -- -- -- -- --
788.79 1.31 3.92 -- 1.35 -- -- -- -0.135 20.3 -- -- -- --
612.3 1.15 3.93 -- -- 3.36 -- -- -0.361 -- 21.27 162 15.7 13
889.46 1.39 3.88 -- -- -- -- -- -0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 554.77 temperature 20 270 > th dose dependent rect. 14 13
2 555.57 temperature 20 270 > th dose dependent rect. 14 15
7 562.81 temperature 20 720 > th dose dependent rect. 15 4
40 576.08 temperature 20 720 > th dose dependent rect. 17 1
57 577.65 temperature 20 90 > th dose dependent rect. 17 12
66 578.13 temperature 20 270 > th dose dependent sin 15 NA
257 594.54 temperature 30 270 < th dose dependent rect. 12 14
264 595.19 temperature 30 720 < th dose independent rect. 12 18
266 595.22 temperature 30 270 < th dose dependent sin 16 NA
334 599.63 temperature 30 720 < th dose independent rect. 12 9
367 601.32 temperature 30 720 < th dose dependent rect. 13 8
427 603.89 temperature 10 720 > th dose dependent rect. 7 16
432 604.15 temperature 30 720 < th dose independent sin 15 NA
449 604.78 temperature 30 720 > th dose independent sin 14 NA
505 606.74 temperature 30 720 > th dose independent rect. 14 5
661 609.47 temperature 25 720 > th dose dependent no NA NA
697 610.22 temperature 25 720 > th dose dependent rect. 20 23
769 611.82 radiation 1 720 > th dose independent rect. 17 2
779 611.85 humidity 90 90 < th dose dependent rect. 17 2
803 612.48 temperature 20 90 > th dose dependent rect. 17 2
940 616.34 temperature 25 720 > th dose dependent rect. 17 23