BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0502400 Os08g0502400|AK106964
(274 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04780.1 | chr2:1677488-1678252 FORWARD LENGTH=255 179 2e-45
AT5G60490.1 | chr5:24325916-24326665 REVERSE LENGTH=250 95 5e-20
AT1G03870.1 | chr1:982625-983368 REVERSE LENGTH=248 88 5e-18
AT5G44130.1 | chr5:17761128-17761871 FORWARD LENGTH=248 79 3e-15
AT5G03170.1 | chr5:752898-753638 REVERSE LENGTH=247 77 1e-14
AT2G20520.1 | chr2:8840663-8841406 FORWARD LENGTH=248 75 3e-14
AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423 65 4e-11
AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404 63 1e-10
AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421 60 1e-09
AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425 57 9e-09
AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421 56 2e-08
>AT2G04780.1 | chr2:1677488-1678252 FORWARD LENGTH=255
Length = 254
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/153 (56%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 50 RHVDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXX 109
+V+L +LLSVAGPFHTFLD L T V+ TFQ+QAN +++GIT+FVPKD
Sbjct: 43 ENVNLTELLSVAGPFHTFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPL 102
Query: 110 XNLTSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLAGGEYTVNVTDDMGTVHVGSM 169
NLT DQLK L L+HALP YYSL+EF L + PV T AGG+Y++ TD GTV + S+
Sbjct: 103 SNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSG-PVSTFAGGQYSLKFTDVSGTVRIDSL 161
Query: 170 WSNPKISSSVYSTRPVAVYEVDRVLLPMQIFRT 202
W+ K+SSSV+ST PVAVY+V+RVLLP IF T
Sbjct: 162 WTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFGT 194
>AT5G60490.1 | chr5:24325916-24326665 REVERSE LENGTH=250
Length = 249
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Query: 53 DLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXNL 112
++ +L AG F F+ LL+ T V Q N S +GIT+F P D +L
Sbjct: 39 NVTKILEKAGQFTVFIRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSL 98
Query: 113 TSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLAG----GEYTVNVTDDMGTVHVGS 168
T +Q L +H +P Y S + F + ++P+ T AG G + +NVT TV++ S
Sbjct: 99 TDEQQVELIQFHVIPSYVSSSNFQTI---SNPLRTQAGDSADGHFPLNVTTSGNTVNITS 155
Query: 169 MWSNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
+N +S +VYS +AVY+VD+VLLP Q+F
Sbjct: 156 GVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVF 187
>AT1G03870.1 | chr1:982625-983368 REVERSE LENGTH=248
Length = 247
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 52 VDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXN 111
++L +L G F TF+ LL T V Q N S +G+TVF P D
Sbjct: 38 INLTAILEKGGQFTTFIHLLNITQVGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQ 97
Query: 112 LTSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLAGGE----YTVNVTDDMGTVHVG 167
L+ D L LYH P+YYS+ + L ++PV T A G Y +N T ++V
Sbjct: 98 LSPDDQVKLILYHVSPKYYSMDD---LLSVSNPVRTQASGRDNGVYGLNFTGQTNQINVS 154
Query: 168 SMWSNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
+ + +IS+S+ RP+AVY VD VLLP ++F
Sbjct: 155 TGYVETRISNSLRQQRPLAVYVVDMVLLPGEMF 187
>AT5G44130.1 | chr5:17761128-17761871 FORWARD LENGTH=248
Length = 247
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 52 VDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXN 111
+++ +L G F T + LL T + Q N S +G+TV P D
Sbjct: 35 INITAILEKGGQFVTLIRLLNTTQIGNQINIQINSSSEGMTVLAPTDNAFQNLKPGTLNK 94
Query: 112 LTSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLA-----GGEYTVNVTDDMGTVHV 166
L+ D L LYH P++Y+L + L ++PV T A GG Y +N T V+V
Sbjct: 95 LSPDDQVKLILYHVSPKFYTLED---LLSVSNPVRTQASGRDVGGVYGLNFTGQGNQVNV 151
Query: 167 GSMWSNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
+ ++S+S+ RP+AVY VD VLLP ++F
Sbjct: 152 STGVVETRLSTSLRQERPLAVYVVDMVLLPEEMF 185
>AT5G03170.1 | chr5:752898-753638 REVERSE LENGTH=247
Length = 246
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 53 DLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSK-DGITVFVPKDXXXXXXXXXXXXN 111
++ +L AG F F+ LL+ T +Q N S +G+TVF P D +
Sbjct: 36 NITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAFNSLKSGTLNS 95
Query: 112 LTSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLAG----GEYTVNVTDDMGTVHVG 167
L+ Q L +H LP ++ +F + ++P+ T AG G++ +N+T V++
Sbjct: 96 LSDQQKVQLVQFHVLPTLITMPQFQTV---SNPLRTQAGDGQNGKFPLNITSSGNQVNIT 152
Query: 168 SMWSNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
+ + +++SVYS + +AVY+VD+VLLP+ +F
Sbjct: 153 TGVVSATVANSVYSDKQLAVYQVDQVLLPLAMF 185
>AT2G20520.1 | chr2:8840663-8841406 FORWARD LENGTH=248
Length = 247
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 9/157 (5%)
Query: 52 VDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXN 111
++L +L F T + LL T V Q N S G+T+F P D +
Sbjct: 37 INLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMTIFAPTDNAFNKLKPGTLNS 96
Query: 112 LTSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLA----GGEYTVNVTDDMGT--VH 165
LT Q L LYH +P+YYSL++ L A++PV T A GG + +N T + V+
Sbjct: 97 LTYQQQIQLMLYHIIPKYYSLSD---LLLASNPVRTQATGQDGGVFGLNFTGQAQSNQVN 153
Query: 166 VGSMWSNPKISSSVYSTRPVAVYEVDRVLLPMQIFRT 202
V + +I++++ P+AVY VD VLLP ++F T
Sbjct: 154 VSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFGT 190
>AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423
Length = 422
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 53 DLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXNL 112
++ LL AG TF +LL + V++TF+S + G+TVF P D NL
Sbjct: 190 NITGLLEKAG-CKTFANLLVSSGVIKTFESTV---EKGLTVFAPSDEAFKARGVPDLTNL 245
Query: 113 TSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLAGGEY--TVNVTDDMGTVHVGSMW 170
T ++ SL YHAL Y A S + T G+Y T + + D +H G
Sbjct: 246 TQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGKYDLTTSTSGDEVILHTGVGP 305
Query: 171 SNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
S +++ +V PV ++ VD VLLP ++F
Sbjct: 306 S--RLADTVVDETPVVIFTVDNVLLPAELF 333
>AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404
Length = 403
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 67 FLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXNLTSDQLKSLALYHAL 126
F D+L+ T +TFQ +G G+TVF P D +L+ +L LYH +
Sbjct: 203 FSDILKSTGADKTFQDTVDG---GLTVFCPSDSAVGKFMPKFK-SLSPANKTALVLYHGM 258
Query: 127 PRYYSLAEFNRLGGAASPVPTLAGGEYTVNVTDDMGTVHVGSMWSNPKISSSVYSTRPVA 186
P Y SL GA + + T ++ V +D V + + K+ ++ P+
Sbjct: 259 PVYQSLQMLRSGNGAVNTLATEGNNKFDFTVQNDGEDVTLETDVVTAKVMGTLKDQEPLI 318
Query: 187 VYEVDRVLLPMQIFR 201
VY++D+VLLP +I++
Sbjct: 319 VYKIDKVLLPREIYK 333
>AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421
Length = 420
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 53 DLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXNL 112
++ LL AG TF +LL + VL+T++S + G+TVF P D L
Sbjct: 189 NITGLLEKAG-CKTFANLLVSSGVLKTYESAV---EKGLTVFAPSDEAFKAEGVPDLTKL 244
Query: 113 TSDQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLAGGEY--TVNVTDDMGTVHVGSMW 170
T ++ SL YHAL Y S + T G++ T + + D +H G
Sbjct: 245 TQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAGKFDLTTSTSGDEVILHTGVAP 304
Query: 171 SNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
S +++ +V PV ++ VD VLLP ++F
Sbjct: 305 S--RLADTVLDATPVVIFTVDNVLLPAELF 332
>AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425
Length = 424
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 70 LLEKTDVLRTFQSQANGSKDGITVFVPKDXXXXXXXXXXXXNLTSDQLKSLALYHALPRY 129
LL +T+Q G G+TVF P D NLT+ + ++ + A+P Y
Sbjct: 203 LLTNPGASKTYQESLEG---GMTVFCPGDDAMKGFLPKYK-NLTAPKKEAFLDFLAVPTY 258
Query: 130 YSLAEFNRLGGAASPVPTLAGGEYTVNVTDDMGTVHVGSMWSNPKISSSVYSTRPVAVYE 189
YS+A G + + T ++ + V +D V + + + KI ++ +P+A+Y
Sbjct: 259 YSMAMLKSNNGPMNTLATDGANKFELTVQNDGEKVTLKTRINTVKIVDTLIDEQPLAIYA 318
Query: 190 VDRVLLPMQIFR 201
D+VLLP ++F+
Sbjct: 319 TDKVLLPKELFK 330
>AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421
Length = 420
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 52 VDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDXXXX-XXXXXXXX 110
++L +L F+ L LL + V+ F++ G+ GITVFVP D
Sbjct: 206 INLTQILINGHNFNVALSLLVASGVITEFENDERGA--GITVFVPTDSAFSDLPSNVNLQ 263
Query: 111 NLTSDQLKSLALYHALPRYYSLAEFNRLGGAASPV-PTLA-----GGEYTVNVTDDMG-- 162
+L ++Q + +H L YY+L + +PV PTLA G YT+N++ G
Sbjct: 264 SLPAEQKAFVLKFHVLHSYYTLGSLESI---TNPVQPTLATEEMGAGSYTLNISRVNGSI 320
Query: 163 -TVHVGSMWSNPKISSSVYSTRPVAVYEVDRVLLPMQIF 200
T++ G + + ++ + + PV+V+ V +VLLP ++F
Sbjct: 321 VTINSGVVLA--VVTQTAFDQNPVSVFGVSKVLLPKELF 357
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,675,254
Number of extensions: 118547
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 11
Length of query: 274
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,447,217
Effective search space: 1495157409
Effective search space used: 1495157409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)