FiT-DB / Search/ Help/ Sample detail

Os05g0563600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0926) R2 : 0.633
β1 : -5.16 (0.344) R2dD : 0.219 R2D : 0.34
β2 : 0.824 (0.217) R2dC : 0.0117 R2C : -0.00152
β3 : 7.31 (0.461) R2dE : 0.309 R2E : 0.315
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 16.4 (1.49) R2dD*E : 0.134 R2D*E : -0.0761
γ1 : 0.0214 (0.207) R2dN8 : 1.85e-05 R2N8 : -0.00876
σ : 1.59
deviance : 1169.14
__
_____
C
peak time of C : 15.6
E
wheather : radiation
threshold : 21.04
memory length : 3231
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 16

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1170.46 1.61 10.1 -5.19 0.817 6.69 -1.58 15.5 -0.0373 15.7 20 3292 15.9 15.9
1382.5 1.73 9.96 -5.28 0.413 5.89 -1.99 -- 0.0563 15.6 20 3100 15.8 16
1169.14 1.59 10.1 -5.16 0.824 7.31 -- 16.4 0.0214 15.6 21.04 3231 15.9 16
1378.58 1.73 9.96 -5.24 0.514 5.64 -- -- 0.0313 15.8 20.01 3100 15.8 16
1204.59 1.62 10.1 -5.03 -- 7.52 -- 16.5 0.034 -- 21.26 3279 15.9 16
1929.25 2.06 10.1 -6.77 0.541 -- -2.71 -- -0.891 16.6 -- -- -- --
1948.8 2.07 10.1 -6.79 0.523 -- -- -- -0.905 16.7 -- -- -- --
1398.58 1.74 9.96 -5.3 -- 5.7 -- -- 0.00955 -- 20 3102 15.8 16
1841.44 2 9.82 -- 1 6.58 -- -- 0.671 15 19.53 3968 15.7 16.1
1963.35 2.07 10.1 -6.81 -- -- -- -- -0.919 -- -- -- -- --
3163.22 2.63 9.9 -- 0.65 -- -- -- -0.149 16.4 -- -- -- --
1854.25 2.01 9.52 -- -- 7.41 -- -- 1.3 -- 20.89 3971 15.7 16.1
3185.96 2.63 9.89 -- -- -- -- -- -0.164 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1226.17 humidity 70 14400 < th dose independent rect. 18 13
2 1227.59 humidity 70 14400 < th dose independent rect. 18 2
3 1227.88 humidity 70 14400 > th dose independent rect. 19 1
4 1229.47 humidity 70 14400 < th dose independent rect. 18 4
14 1231.50 humidity 70 14400 > th dose independent rect. 19 12
15 1237.24 humidity 70 14400 > th dose independent rect. 19 8
18 1237.77 humidity 70 14400 > th dose independent rect. 19 6
25 1244.55 radiation 20 1440 > th dose independent rect. 16 15
36 1255.37 radiation 20 1440 < th dose independent rect. 16 15
41 1260.82 radiation 20 4320 > th dose dependent rect. 16 16
47 1275.77 radiation 20 1440 < th dose independent rect. 16 12
50 1277.29 radiation 1 1440 > th dose dependent rect. 18 12
51 1277.87 radiation 10 1440 < th dose dependent rect. 18 12
52 1277.90 humidity 80 1440 < th dose dependent rect. 16 5
56 1278.46 radiation 20 1440 < th dose independent rect. 16 5
57 1278.60 radiation 20 14400 > th dose dependent rect. 16 2
74 1279.20 radiation 20 1440 < th dose independent rect. 16 1
77 1279.51 radiation 20 1440 > th dose independent rect. 16 1
93 1280.26 humidity 70 1440 < th dose independent sin 14 NA
113 1285.00 humidity 80 1440 < th dose dependent rect. 15 17
117 1286.00 temperature 30 1440 > th dose dependent sin 17 NA
119 1286.14 temperature 30 1440 > th dose dependent rect. 12 7
172 1287.87 radiation 1 1440 > th dose dependent rect. 4 2
210 1289.21 radiation 30 1440 > th dose independent rect. 15 17
229 1290.04 humidity 80 1440 < th dose dependent sin 14 NA
232 1290.28 temperature 30 1440 > th dose dependent no NA NA
325 1290.70 humidity 70 1440 < th dose independent rect. 15 16
327 1290.83 humidity 70 1440 < th dose independent rect. 15 5
339 1291.00 temperature 30 1440 > th dose dependent rect. 15 23
340 1291.02 humidity 70 1440 > th dose independent sin 14 NA
341 1291.06 temperature 30 1440 > th dose dependent rect. 17 23
345 1291.40 temperature 30 1440 > th dose independent rect. 16 3
402 1293.10 temperature 30 14400 > th dose dependent rect. 17 1
404 1293.14 temperature 30 1440 < th dose independent rect. 17 20
406 1293.35 radiation 30 1440 < th dose independent rect. 15 17
414 1294.02 temperature 30 1440 < th dose independent rect. 16 13
418 1294.13 humidity 70 14400 < th dose dependent rect. 18 1
438 1294.45 temperature 30 1440 < th dose independent rect. 16 9
439 1294.48 temperature 30 1440 < th dose independent rect. 16 5
443 1294.53 temperature 30 1440 < th dose independent rect. 16 15
458 1295.56 humidity 80 1440 < th dose dependent rect. 16 1
470 1296.32 temperature 30 1440 > th dose independent sin 13 NA
471 1296.61 temperature 30 1440 < th dose independent rect. 9 18
476 1296.66 temperature 30 1440 < th dose independent rect. 9 22
478 1296.72 temperature 30 1440 < th dose independent rect. 9 16
483 1296.78 temperature 30 1440 < th dose independent rect. 9 12
501 1296.82 temperature 30 1440 < th dose independent rect. 9 10
518 1297.09 temperature 30 1440 > th dose independent rect. 17 20
543 1297.76 temperature 30 1440 < th dose independent sin 12 NA
575 1299.34 temperature 30 1440 > th dose independent rect. 9 10
655 1301.55 humidity 60 14400 < th dose dependent rect. 16 2
660 1301.82 humidity 50 1440 > th dose dependent rect. 6 19
664 1302.05 humidity 50 1440 > th dose dependent rect. 6 17
674 1302.37 temperature 30 1440 < th dose independent rect. 6 21
681 1302.48 temperature 30 1440 < th dose independent rect. 6 19
689 1302.52 temperature 30 1440 < th dose independent rect. 2 23
696 1302.54 temperature 30 1440 < th dose independent rect. 6 15
701 1302.55 temperature 30 1440 < th dose independent rect. 22 23
702 1302.56 temperature 30 1440 < th dose independent no NA NA
706 1302.56 temperature 30 1440 < th dose independent rect. 20 23
710 1302.58 temperature 30 1440 < th dose independent rect. 2 19
841 1303.87 radiation 40 1440 > th dose dependent sin 13 NA
845 1304.16 radiation 10 1440 < th dose dependent rect. 22 8
848 1304.37 humidity 70 1440 > th dose independent rect. 15 12
853 1304.55 humidity 70 1440 > th dose independent rect. 15 10
857 1304.73 humidity 70 1440 > th dose independent rect. 15 16
870 1305.04 humidity 70 1440 > th dose independent rect. 15 6
872 1305.10 humidity 70 1440 > th dose independent rect. 15 8
876 1305.29 radiation 10 1440 < th dose dependent rect. 2 4
904 1305.96 temperature 30 1440 > th dose independent no NA NA