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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0128000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.95 (0.12) R2 : 0.696
β1 : -11.2 (0.766) R2dD : 0.935 R2D : 0.33
β2 : 1.19 (0.204) R2dC : 0.024 R2C : -0.0229
β3 : 5.64 (0.391) R2dE : 0.383 R2E : -0.0212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.27 (2.93) R2dD*E : 0.0376 R2D*E : -0.3
γ1 : -0.989 (0.233) R2dN8 : 0.0269 R2N8 : -0.0449
σ : 1.56
deviance : 1122.61
__
_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 25.96
memory length : 1245
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1123.8 1.58 7.98 -11.3 1.24 5.69 -0.0248 -8.31 -1.11 13 25.67 1239 11.2 --
1144.77 1.58 7.74 -9.34 1.23 4.9 0.607 -- -0.578 13.1 25.86 1223 10.6 --
1122.61 1.56 7.95 -11.2 1.19 5.64 -- -8.27 -0.989 12.9 25.96 1245 11.3 --
1144.73 1.58 7.71 -9.26 1.21 4.83 -- -- -0.548 13 25.95 1234 10.8 --
1183.29 1.6 7.9 -10.8 -- 5.16 -- -6.38 -0.826 -- 26.26 1359 11.7 --
2051.61 2.12 7.67 -7.84 0.483 -- 1.11 -- -0.369 7.94 -- -- -- --
2053.19 2.12 7.67 -7.81 0.502 -- -- -- -0.366 9.38 -- -- -- --
1204.64 1.62 7.71 -9.27 -- 4.41 -- -- -0.473 -- 26.35 1368 11.1 --
3224.95 2.64 7.4 -- 1 3.29 -- -- 0.882 13.5 27.22 1093 6.93 --
2067.93 2.12 7.68 -7.81 -- -- -- -- -0.364 -- -- -- -- --
3658.93 2.83 7.47 -- 0.53 -- -- -- 0.503 10.5 -- -- -- --
3270.94 2.66 7.38 -- -- 3.05 -- -- 0.972 -- 27.9 1285 5.98 --
3676.16 2.83 7.49 -- -- -- -- -- 0.502 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1160.36 temperature 25 1440 > th dose dependent rect. 13 21
5 1164.58 temperature 25 1440 > th dose dependent sin 19 NA
7 1164.70 temperature 25 1440 > th dose dependent rect. 6 17
30 1166.21 temperature 25 1440 > th dose dependent rect. 13 10
37 1166.72 temperature 25 1440 > th dose dependent rect. 11 12
84 1168.67 temperature 25 1440 > th dose dependent rect. 20 23
92 1168.85 temperature 25 1440 > th dose dependent rect. 16 1
98 1169.03 temperature 25 1440 > th dose dependent no NA NA
114 1169.78 temperature 25 1440 > th dose dependent rect. 15 4
360 1214.88 temperature 30 1440 < th dose independent rect. 10 21
363 1214.96 temperature 30 1440 < th dose independent rect. 10 17
373 1215.18 temperature 30 1440 < th dose independent rect. 10 9
375 1215.19 temperature 30 1440 < th dose independent rect. 10 12
406 1216.45 temperature 30 1440 < th dose independent sin 17 NA
409 1216.93 temperature 30 1440 < th dose independent rect. 18 22
416 1219.40 temperature 30 1440 < th dose independent rect. 13 23
429 1221.84 temperature 30 1440 < th dose independent rect. 13 18
430 1221.89 temperature 30 1440 < th dose independent rect. 13 14
434 1221.93 temperature 30 1440 > th dose independent sin 16 NA
436 1222.00 temperature 30 1440 < th dose independent rect. 13 12
441 1222.17 temperature 30 1440 < th dose independent rect. 13 9
443 1222.19 temperature 30 1440 < th dose independent rect. 13 6
453 1222.99 temperature 30 1440 > th dose independent rect. 11 8
467 1223.01 temperature 30 1440 < th dose independent rect. 6 21
469 1223.08 temperature 30 1440 < th dose independent rect. 6 19
470 1223.09 temperature 30 1440 < th dose independent rect. 2 23
475 1223.14 temperature 30 1440 < th dose independent rect. 21 22
477 1223.15 temperature 30 1440 < th dose independent rect. 24 19
489 1223.19 temperature 30 1440 < th dose independent no NA NA
492 1223.20 temperature 30 1440 < th dose independent rect. 6 13
493 1223.20 temperature 30 1440 < th dose independent rect. 2 17
497 1223.21 temperature 30 1440 < th dose independent rect. 6 16
499 1223.22 temperature 30 1440 < th dose independent rect. 2 20
580 1224.16 temperature 30 1440 < th dose independent rect. 9 7
582 1224.75 wind 7 43200 < th dose independent rect. 19 21
583 1224.86 wind 7 43200 > th dose independent rect. 19 21
637 1227.23 temperature 30 1440 > th dose independent rect. 13 6
652 1227.44 wind 5 43200 > th dose dependent rect. 19 21
680 1229.06 temperature 30 1440 > th dose independent rect. 17 23
681 1229.23 temperature 30 1440 > th dose independent rect. 13 23
728 1232.57 wind 5 43200 > th dose dependent rect. 3 13
731 1232.75 temperature 30 1440 > th dose independent no NA NA
826 1232.89 temperature 30 1440 < th dose independent rect. 21 19
827 1232.91 temperature 30 1440 < th dose independent rect. 23 17
831 1232.99 temperature 30 1440 < th dose independent rect. 6 10
833 1233.02 temperature 30 1440 < th dose independent rect. 2 14
852 1234.64 wind 5 43200 > th dose dependent rect. 24 16
905 1235.74 wind 5 43200 > th dose independent rect. 3 13
917 1236.03 temperature 30 1440 > th dose independent rect. 9 7
941 1239.04 wind 5 43200 < th dose independent rect. 3 13
962 1241.84 wind 5 43200 > th dose dependent sin 2 NA
990 1244.04 wind 5 43200 > th dose independent rect. 24 17