BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0128000 Os03g0128000|AK062278
         (163 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0128000  Hypothetical protein                                242   1e-64
Os04g0574200  Beta-Ig-H3/fasciclin domain containing protein      100   4e-22
Os08g0321000  Beta-Ig-H3/fasciclin domain containing protein       64   4e-11

>Os03g0128000 Hypothetical protein
          Length = 163

 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/139 (85%), Positives = 119/139 (85%)

Query: 25  RGLNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG 84
           RGLNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG
Sbjct: 25  RGLNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG 84

Query: 85  IKNALRLHAILDYFDPKKIRGLPDAGRRAVEAGGSQGNEXXXXXXXXXXXXXXXXXXXXF 144
           IKNALRLHAILDYFDPKKIRGLPDAGRRAVEAGGSQGNE                    F
Sbjct: 85  IKNALRLHAILDYFDPKKIRGLPDAGRRAVEAGGSQGNEGVVRRRVAVSSARRISRGRVF 144

Query: 145 LRAALSTSFFFPFFHVQCR 163
           LRAALSTSFFFPFFHVQCR
Sbjct: 145 LRAALSTSFFFPFFHVQCR 163



>Os04g0574200 Beta-Ig-H3/fasciclin domain containing protein
          Length = 431

 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 64/84 (76%), Gaps = 2/84 (2%)

Query: 28  NITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAGIKN 87
           NIT +L+GYP+Y ++N YLS+TKVCDEIN+R ++T LVL +G MS+LV  ++ SLA IKN
Sbjct: 25  NITDILDGYPEYSLYNSYLSQTKVCDEINSRSTVTCLVLTNGAMSSLV--SNLSLADIKN 82

Query: 88  ALRLHAILDYFDPKKIRGLPDAGR 111
           ALRL  +LDY+D KK+  L D   
Sbjct: 83  ALRLLTLLDYYDTKKLHSLSDGSE 106



>Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein
          Length = 415

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 25  RGLNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG 84
            G NIT +L  +P+Y  FNK L+ET++  +IN R +IT+LV+ +G M  L      +L  
Sbjct: 24  EGYNITKILGDHPEYSQFNKLLTETRLAGDINRRRTITVLVVANGDMGALS-GGHYTLPT 82

Query: 85  IKNALRLHAILDYFDPKKIRGL 106
           +++ L +H ++DY+  KK+  L
Sbjct: 83  LRHILEMHILVDYYGAKKLHQL 104



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,917,193
Number of extensions: 125304
Number of successful extensions: 253
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 3
Length of query: 163
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 70
Effective length of database: 12,179,899
Effective search space: 852592930
Effective search space used: 852592930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)