BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0128000 Os03g0128000|AK062278
(163 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423 83 7e-17
AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421 81 2e-16
AT3G12660.1 | chr3:4019060-4019827 FORWARD LENGTH=256 73 7e-14
AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404 71 3e-13
AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425 62 1e-10
AT2G24450.1 | chr2:10393019-10393861 REVERSE LENGTH=281 54 3e-08
AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421 50 5e-07
>AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423
Length = 422
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 25 RGLNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG 84
G NIT +L+ P+Y FN YLS+TK+ DEIN+R +IT+LVL +G MS+L L+
Sbjct: 24 SGHNITQILSDTPEYSSFNNYLSQTKLADEINSRTTITVLVLNNGAMSSLA--GKHPLSV 81
Query: 85 IKNALRLHAILDYFDPKKIRGL 106
+KNAL L +LDY+DP K+ L
Sbjct: 82 VKNALSLLVLLDYYDPLKLHQL 103
>AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421
Length = 420
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 28 NITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAGIKN 87
NIT +L PDY FN YLS+TK+ DEIN+R +IT+LVL +G MS L L+ IK+
Sbjct: 27 NITQILADSPDYSSFNSYLSQTKLADEINSRTTITVLVLNNGAMSALA--GKHPLSVIKS 84
Query: 88 ALRLHAILDYFDPKKIRGL 106
AL L +LDY+DP+K+ +
Sbjct: 85 ALSLLVLLDYYDPQKLHKI 103
>AT3G12660.1 | chr3:4019060-4019827 FORWARD LENGTH=256
Length = 255
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 25 RGLNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG 84
NIT +LN + D+ FN+ LSET++ IN R++IT+LV+ +G +S+L + Q +
Sbjct: 22 NSFNITNILNEHDDFSNFNQLLSETQLASTINKRQTITVLVVSNGALSSL---SGQPTSV 78
Query: 85 IKNALRLHAILDYFDPKKIRGL 106
IK L LH +LDY+D KK++ L
Sbjct: 79 IKKILSLHIVLDYYDQKKLKNL 100
>AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404
Length = 403
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 28 NITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAGIKN 87
NIT +L PD+ FN YLS T + DEIN R++IT+L + + MS+ +L SL I+N
Sbjct: 28 NITRILAKDPDFSTFNHYLSATHLADEINRRQTITVLAVDNSAMSS-ILSNGYSLYQIRN 86
Query: 88 ALRLHAILDYFDPKKIRGLPDAGRRAVEAGGSQGN 122
L LH ++DYF KK+ + D S G+
Sbjct: 87 ILSLHVLVDYFGTKKLHQITDGSTSTASMFQSTGS 121
>AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425
Length = 424
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 28 NITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAGIKN 87
N+T +L +P + F+ +L++T + DEIN R +IT+ + + MS L +L+ +KN
Sbjct: 26 NVTRLLANHPSFSSFSHFLTQTHLADEINRRRTITVCAVDNAAMSALT-SKGYTLSTLKN 84
Query: 88 ALRLHAILDYFDPKKIRGLPDAGRRA 113
L LH +LDYF KK+ + D A
Sbjct: 85 ILSLHVLLDYFGTKKLHQIRDGSALA 110
>AT2G24450.1 | chr2:10393019-10393861 REVERSE LENGTH=281
Length = 280
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 13/85 (15%)
Query: 27 LNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSLAG-- 84
+NIT +L YP++ + L++T++ IN R++IT+L L + DA S++G
Sbjct: 25 VNITRVLEKYPEFSTMTELLAKTELTPIINKRQTITVLALNN--------DAIGSISGRP 76
Query: 85 ---IKNALRLHAILDYFDPKKIRGL 106
+KN L H +LDYFD K++ L
Sbjct: 77 EEEVKNILMNHVVLDYFDELKLKAL 101
>AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421
Length = 420
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 27 LNITAMLNGYPDYKMFNKYLSETKVCDEINARESITLLVLGDGPMSTLVLDADQSL--AG 84
+N+TA+L+ +P+ F+ L + + E++ R S+TLL + + S+ LD + L +
Sbjct: 29 INVTAVLSSFPNLSSFSNLLVSSGIAAELSGRNSLTLLAVPNSQFSSASLDLTRRLPPSA 88
Query: 85 IKNALRLHAILDYFDPKKIRGLPDAGRRAV---EAGG 118
+ + LR H +L + +R +P +G EA G
Sbjct: 89 LADLLRFHVLLQFLSDSDLRRIPPSGSAVTTLYEASG 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,470,332
Number of extensions: 76602
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 7
Length of query: 163
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 72
Effective length of database: 8,611,713
Effective search space: 620043336
Effective search space used: 620043336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)