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Os08g0490600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Beta-Ig-H3/fasciclin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0321) R2 : 0.665
β1 : 0.0563 (0.119) R2dD : 0.000184 R2D : -0.154
β2 : 1.33 (0.0821) R2dC : 0.197 R2C : 0.109
β3 : 1.67 (0.147) R2dE : 0.104 R2E : -0.0721
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.08 (0.488) R2dD*E : 0.0553 R2D*E : -0.0705
γ1 : -1.42 (0.0683) R2dN8 : 0.437 R2N8 : 0.26
σ : 0.591
deviance : 160.75
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_____
C
peak time of C : 19.4
E
wheather : humidity
threshold : 67.99
memory length : 7659
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.32 0.595 11.4 0.0493 1.33 1.66 -0.397 4.13 -1.42 19.4 68 7662 -- --
185.54 0.634 11.3 -0.0401 1.24 1.72 -0.211 -- -1.42 19.2 68 7898 -- --
160.75 0.591 11.4 0.0563 1.33 1.67 -- 4.08 -1.42 19.4 67.99 7659 -- --
184.52 0.633 11.3 -0.0666 1.38 1.66 -- -- -1.45 19 67.91 8318 -- --
249.25 0.735 11.4 0.0708 -- 2.01 -- 3.64 -1.45 -- 67.99 7826 -- --
235.65 0.72 11.3 -0.38 1.44 -- -0.258 -- -1.29 19.4 -- -- -- --
235.84 0.719 11.3 -0.374 1.44 -- -- -- -1.29 19.4 -- -- -- --
268.04 0.763 11.3 -0.0813 -- 2.09 -- -- -1.61 -- 68 7856 -- --
184.56 0.633 11.3 -- 1.41 1.68 -- -- -1.45 19.1 67.84 8325 -- --
345.7 0.869 11.2 -0.397 -- -- -- -- -1.31 -- -- -- -- --
239.53 0.724 11.3 -- 1.44 -- -- -- -1.25 19.4 -- -- -- --
268.25 0.763 11.3 -- -- 2.11 -- -- -1.61 -- 68.5 7855 -- --
349.87 0.873 11.2 -- -- -- -- -- -1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 168.30 wind 9.0 43200 > th dose dependent rect. 12 1
2 169.18 wind 3.0 14400 < th dose independent rect. 3 1
3 169.70 wind 3.0 43200 < th dose independent rect. 5 2
4 169.80 wind 3.0 43200 > th dose independent rect. 5 2
6 170.35 humidity 80.0 1440 < th dose independent rect. 7 5
8 170.92 wind 5.0 43200 < th dose dependent rect. 5 2
9 170.93 wind 3.0 14400 > th dose independent rect. 3 1
13 171.65 precipitation 0.1 14400 < th dose independent rect. 2 17
14 171.65 precipitation 0.1 14400 < th dose dependent rect. 2 17
15 171.79 precipitation 0.1 14400 > th dose independent rect. 2 17
18 171.85 humidity 60.0 14400 < th dose independent rect. 14 1
20 171.95 humidity 80.0 14400 > th dose dependent rect. 8 2
27 172.18 humidity 80.0 1440 > th dose independent rect. 7 5
31 172.28 humidity 80.0 14400 > th dose independent rect. 8 3
32 172.28 radiation 30.0 1440 < th dose dependent rect. 7 1
45 172.56 wind 1.0 43200 > th dose dependent rect. 5 2
62 172.99 radiation 1.0 1440 > th dose dependent rect. 7 1
67 173.04 humidity 60.0 14400 < th dose independent rect. 13 21
69 173.06 humidity 60.0 14400 < th dose independent rect. 14 4
78 173.31 humidity 60.0 14400 < th dose independent rect. 11 23
79 173.31 wind 5.0 14400 < th dose dependent rect. 3 2
83 173.35 humidity 60.0 14400 > th dose independent rect. 14 2
86 173.39 humidity 70.0 14400 < th dose dependent rect. 12 1
99 173.59 humidity 60.0 14400 < th dose independent rect. 14 6
117 173.64 wind 3.0 43200 < th dose independent rect. 1 6
120 173.72 wind 3.0 43200 > th dose independent rect. 1 6
121 173.72 humidity 70.0 1440 > th dose dependent rect. 8 2
122 173.76 humidity 60.0 14400 < th dose independent rect. 11 7
130 173.94 precipitation 0.1 14400 > th dose independent rect. 14 3
133 174.00 humidity 80.0 14400 < th dose independent rect. 9 2
135 174.03 precipitation 0.1 14400 > th dose dependent sin 2 NA
137 174.08 humidity 60.0 14400 < th dose independent sin 17 NA
139 174.09 precipitation 0.1 14400 < th dose independent rect. 14 3
140 174.09 humidity 60.0 14400 < th dose independent rect. 11 9
153 174.09 precipitation 0.1 14400 < th dose dependent rect. 14 3
157 174.15 humidity 60.0 14400 > th dose dependent rect. 9 1
187 174.30 humidity 70.0 1440 > th dose dependent rect. 7 5
200 174.42 precipitation 0.1 14400 > th dose dependent rect. 24 20
201 174.44 humidity 60.0 14400 > th dose independent rect. 13 21
209 174.53 humidity 60.0 14400 > th dose independent rect. 14 4
211 174.53 humidity 70.0 14400 < th dose dependent rect. 11 23
221 174.70 precipitation 0.1 14400 < th dose independent sin 1 NA
222 174.70 precipitation 0.1 14400 < th dose dependent sin 1 NA
224 174.71 precipitation 0.1 14400 > th dose dependent rect. 14 3
226 174.74 precipitation 0.1 14400 > th dose independent sin 1 NA
236 174.85 humidity 70.0 14400 < th dose dependent rect. 11 7
237 174.86 humidity 60.0 14400 < th dose independent rect. 9 9
250 174.92 humidity 60.0 14400 < th dose independent rect. 19 23
251 174.92 humidity 60.0 4320 < th dose dependent rect. 15 3
256 174.97 humidity 60.0 14400 < th dose independent rect. 9 23
259 174.98 humidity 60.0 14400 < th dose independent rect. 9 11
299 175.01 humidity 70.0 14400 < th dose dependent rect. 11 10
319 175.07 humidity 60.0 14400 < th dose independent no NA NA
408 175.13 humidity 70.0 14400 < th dose dependent rect. 16 23
427 175.19 humidity 60.0 14400 > th dose independent rect. 14 11
431 175.20 humidity 60.0 14400 < th dose independent rect. 14 23
438 175.22 humidity 90.0 14400 < th dose dependent rect. 9 1
439 175.24 humidity 60.0 14400 > th dose independent rect. 14 6
442 175.25 humidity 60.0 14400 > th dose independent rect. 14 9
444 175.25 humidity 60.0 4320 < th dose dependent rect. 15 5
496 175.40 humidity 60.0 14400 < th dose independent rect. 17 23
497 175.40 humidity 70.0 14400 < th dose dependent sin 21 NA
515 175.47 humidity 70.0 14400 < th dose dependent rect. 9 23
517 175.49 humidity 70.0 14400 < th dose dependent rect. 9 13
527 175.50 humidity 70.0 14400 < th dose dependent no NA NA
529 175.50 humidity 70.0 14400 < th dose dependent rect. 9 9
532 175.50 humidity 70.0 14400 < th dose dependent rect. 7 14
611 175.51 humidity 70.0 14400 < th dose dependent rect. 20 23
657 175.54 humidity 90.0 14400 < th dose dependent rect. 9 6
664 175.58 humidity 50.0 4320 > th dose independent sin 13 NA
690 175.70 humidity 70.0 14400 < th dose independent rect. 17 1
694 175.74 humidity 50.0 14400 > th dose dependent rect. 9 4
725 175.88 radiation 40.0 1440 < th dose dependent rect. 22 10
828 176.15 humidity 60.0 14400 > th dose independent sin 17 NA
836 176.18 humidity 60.0 14400 > th dose independent rect. 11 7
894 176.32 humidity 60.0 14400 > th dose independent rect. 19 23
907 176.36 humidity 60.0 14400 > th dose independent rect. 24 18
913 176.37 humidity 60.0 14400 > th dose independent rect. 8 10
924 176.38 humidity 60.0 14400 > th dose independent rect. 2 16
926 176.38 radiation 30.0 1440 < th dose dependent rect. 2 6
947 176.43 wind 1.0 14400 > th dose dependent rect. 3 1
961 176.46 humidity 70.0 14400 < th dose independent rect. 17 16
965 176.47 precipitation 0.1 14400 < th dose independent rect. 14 6
966 176.47 precipitation 0.1 14400 < th dose dependent rect. 14 6