BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0490600 Os08g0490600|AK108305
(181 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425 114 3e-26
AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404 99 1e-21
AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423 72 1e-13
AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421 68 2e-12
AT2G20520.1 | chr2:8840663-8841406 FORWARD LENGTH=248 63 1e-10
AT2G04780.1 | chr2:1677488-1678252 FORWARD LENGTH=255 56 1e-08
AT5G44130.1 | chr5:17761128-17761871 FORWARD LENGTH=248 54 6e-08
AT1G03870.1 | chr1:982625-983368 REVERSE LENGTH=248 53 1e-07
AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421 52 1e-07
AT5G03170.1 | chr5:752898-753638 REVERSE LENGTH=247 51 4e-07
AT5G60490.1 | chr5:24325916-24326665 REVERSE LENGTH=250 49 2e-06
>AT5G55730.1 | chr5:22558375-22560392 REVERSE LENGTH=425
Length = 424
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 74/103 (71%), Gaps = 3/103 (2%)
Query: 1 MRAFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNE 60
M+ F+P YKNLTA K + L F AVP YYS+ LKSNNG MNTLATDG+ K F TVQN+
Sbjct: 231 MKGFLPKYKNLTAPKKEAFLDFLAVPTYYSMAMLKSNNGPMNTLATDGANK-FELTVQND 289
Query: 61 GDKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE 103
G+KVT+KT + +I DT+ D+ P+AIYA D VL P ELF+
Sbjct: 290 GEKVTLKTRIN--TVKIVDTLIDEQPLAIYATDKVLLPKELFK 330
>AT4G12730.1 | chr4:7491598-7492809 REVERSE LENGTH=404
Length = 403
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 74/100 (74%), Gaps = 3/100 (3%)
Query: 4 FMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNEGDK 63
FMP +K+L+ K +L+L+H +PVY SL+ L+S NG +NTLAT+G+ K F+FTVQN+G+
Sbjct: 237 FMPKFKSLSPANKTALVLYHGMPVYQSLQMLRSGNGAVNTLATEGNNK-FDFTVQNDGED 295
Query: 64 VTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE 103
VT++TD A++ T+ D++P+ +Y +D VL P E+++
Sbjct: 296 VTLETDVV--TAKVMGTLKDQEPLIVYKIDKVLLPREIYK 333
>AT3G60900.1 | chr3:22499573-22500841 REVERSE LENGTH=423
Length = 422
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 5 MPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNEGDKV 64
+P NLT SLL +HA+ Y SLK+N ++TLAT+G+ K ++ T GD+V
Sbjct: 239 VPDLTNLTQAEVVSLLEYHALAEYKPKGSLKTNKDAISTLATNGAGK-YDLTTSTSGDEV 297
Query: 65 TIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELF 102
+ T G +R+ DTV D+ P+ I+ VD VL P ELF
Sbjct: 298 ILHTGV--GPSRLADTVVDETPVVIFTVDNVLLPAELF 333
>AT2G45470.1 | chr2:18742797-18744059 REVERSE LENGTH=421
Length = 420
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 7/100 (7%)
Query: 5 MPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNEGDKV 64
+P LT SLL +HA+ Y SLK+N ++TLAT+G+ K F+ T GD+V
Sbjct: 238 VPDLTKLTQAEVVSLLEYHALAEYKPKGSLKTNKNNISTLATNGAGK-FDLTTSTSGDEV 296
Query: 65 TIKTDASDGVA--RIKDTVYDKDPIAIYAVDTVLEPVELF 102
+ T GVA R+ DTV D P+ I+ VD VL P ELF
Sbjct: 297 ILHT----GVAPSRLADTVLDATPVVIFTVDNVLLPAELF 332
>AT2G20520.1 | chr2:8840663-8841406 FORWARD LENGTH=248
Length = 247
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 7 TYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLAT--DGSAKNFNFTVQNEGDKV 64
T +LT + L+L+H +P YYSL L + + T AT DG NFT Q + ++V
Sbjct: 93 TLNSLTYQQQIQLMLYHIIPKYYSLSDLLLASNPVRTQATGQDGGVFGLNFTGQAQSNQV 152
Query: 65 TIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELF 102
+ T + RI + + + P+A+Y VD+VL P ELF
Sbjct: 153 NVSTGVVE--TRINNALRQQFPLAVYVVDSVLLPEELF 188
>AT2G04780.1 | chr2:1677488-1678252 FORWARD LENGTH=255
Length = 254
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 6 PTYKNLTADGKASLLLFHAVPVYYSLRSLK--SNNGVMNTLATDGSAKNFNFTVQNEGDK 63
P NLT D L+LFHA+P YYSL K S +G ++T A G + FT +
Sbjct: 100 PPLSNLTKDQLKQLVLFHALPHYYSLSEFKNLSQSGPVSTFA--GGQYSLKFTDVSG--- 154
Query: 64 VTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELF 102
T++ D+ ++ +V+ DP+A+Y V+ VL P +F
Sbjct: 155 -TVRIDSLWTRTKVSSSVFSTDPVAVYQVNRVLLPEAIF 192
>AT5G44130.1 | chr5:17761128-17761871 FORWARD LENGTH=248
Length = 247
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 7 TYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATD---GSAKNFNFTVQNEGDK 63
T L+ D + L+L+H P +Y+L L S + + T A+ G NFT Q G++
Sbjct: 91 TLNKLSPDDQVKLILYHVSPKFYTLEDLLSVSNPVRTQASGRDVGGVYGLNFTGQ--GNQ 148
Query: 64 VTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELF 102
V + T + R+ ++ + P+A+Y VD VL P E+F
Sbjct: 149 VNVSTGVVE--TRLSTSLRQERPLAVYVVDMVLLPEEMF 185
>AT1G03870.1 | chr1:982625-983368 REVERSE LENGTH=248
Length = 247
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 7 TYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLAT--DGSAKNFNFTVQNEGDKV 64
T L+ D + L+L+H P YYS+ L S + + T A+ D NFT Q +++
Sbjct: 94 TLNQLSPDDQVKLILYHVSPKYYSMDDLLSVSNPVRTQASGRDNGVYGLNFTGQT--NQI 151
Query: 65 TIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELF 102
+ T + RI +++ + P+A+Y VD VL P E+F
Sbjct: 152 NVSTGYVE--TRISNSLRQQRPLAVYVVDMVLLPGEMF 187
>AT3G46550.1 | chr3:17136612-17137874 REVERSE LENGTH=421
Length = 420
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 9 KNLTADGKASLLLFHAVPVYYSLRSLKS-NNGVMNTLATDG-SAKNFNFTVQN-EGDKVT 65
++L A+ KA +L FH + YY+L SL+S N V TLAT+ A ++ + G VT
Sbjct: 263 QSLPAEQKAFVLKFHVLHSYYTLGSLESITNPVQPTLATEEMGAGSYTLNISRVNGSIVT 322
Query: 66 IKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELF 102
I + +A + T +D++P++++ V VL P ELF
Sbjct: 323 INSGVV--LAVVTQTAFDQNPVSVFGVSKVLLPKELF 357
>AT5G03170.1 | chr5:752898-753638 REVERSE LENGTH=247
Length = 246
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 7 TYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNEGDKVTI 66
T +L+ K L+ FH +P ++ ++ + + T A DG F + + G++V I
Sbjct: 92 TLNSLSDQQKVQLVQFHVLPTLITMPQFQTVSNPLRTQAGDGQNGKFPLNITSSGNQVNI 151
Query: 67 KTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELF 102
T A + ++VY +A+Y VD VL P+ +F
Sbjct: 152 TTGVVS--ATVANSVYSDKQLAVYQVDQVLLPLAMF 185
>AT5G60490.1 | chr5:24325916-24326665 REVERSE LENGTH=250
Length = 249
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 7 TYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNEGDKVTI 66
T +LT + + L+ FH +P Y S + ++ + + T A D + +F V G+ V I
Sbjct: 94 TLNSLTDEQQVELIQFHVIPSYVSSSNFQTISNPLRTQAGDSADGHFPLNVTTSGNTVNI 153
Query: 67 KTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE 103
+ ++ + VY +A+Y VD VL P ++F+
Sbjct: 154 TSGVTN--TTVSGNVYSDGQLAVYQVDKVLLPQQVFD 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,421,796
Number of extensions: 72911
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 11
Length of query: 181
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 89
Effective length of database: 8,584,297
Effective search space: 764002433
Effective search space used: 764002433
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)