BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0490600 Os08g0490600|AK108305
(181 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0490600 Beta-Ig-H3/fasciclin domain containing protein 248 2e-66
Os09g0476800 Glutelin family protein 168 2e-42
Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein 100 6e-22
Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein 99 1e-21
Os06g0285100 91 4e-19
>Os08g0490600 Beta-Ig-H3/fasciclin domain containing protein
Length = 181
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 126/166 (75%), Positives = 126/166 (75%)
Query: 1 MRAFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNE 60
MRAFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNE
Sbjct: 1 MRAFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNE 60
Query: 61 GDKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFEXXXXXXXXXXXXXXXXX 120
GDKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE
Sbjct: 61 GDKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFEPAESPAPAPAPVADAPK 120
Query: 121 XXXXXXXXHRHVXXXXXXXXXXXXXXXQRKSSKKNDAAAGASCLRW 166
HRHV QRKSSKKNDAAAGASCLRW
Sbjct: 121 ASKSKKASHRHVADAPGPAGDDAPPADQRKSSKKNDAAAGASCLRW 166
>Os09g0476800 Glutelin family protein
Length = 273
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/103 (77%), Positives = 89/103 (86%)
Query: 1 MRAFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSAKNFNFTVQNE 60
+RAF+P YKNLTADGKA LLLFHAVPVYYS SLKSNNGVMNTLATDG+AKN+NFTVQNE
Sbjct: 91 VRAFLPRYKNLTADGKAELLLFHAVPVYYSRGSLKSNNGVMNTLATDGAAKNYNFTVQNE 150
Query: 61 GDKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE 103
GD VTIKT AS AR+K TV D DP+AI+ VD V+EPVELF+
Sbjct: 151 GDAVTIKTAASGDAARVKSTVVDADPVAIFTVDAVIEPVELFK 193
>Os09g0248100 Beta-Ig-H3/fasciclin domain containing protein
Length = 401
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 74/102 (72%), Gaps = 3/102 (2%)
Query: 3 AFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDG-SAKNFNFTVQNEG 61
AFMP+YKNLTA K ++LL+HAVP Y+SL+ LKSNNG++ TLAT S K++++ VQN+G
Sbjct: 238 AFMPSYKNLTAKAKTAILLYHAVPDYFSLQLLKSNNGMVTTLATASESKKDYSYDVQNKG 297
Query: 62 DKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE 103
+ VT+ T + + TV D +P+A+YAV L+P EL++
Sbjct: 298 ETVTLDTRVVNSA--VTATVGDAEPLAVYAVTKFLKPKELYK 337
>Os08g0321000 Beta-Ig-H3/fasciclin domain containing protein
Length = 415
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 73/102 (71%), Gaps = 3/102 (2%)
Query: 3 AFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATDGSA-KNFNFTVQNEG 61
AF+P YKNLTA GKA++LL+HAVP YYSL+ LKSN+G ++TLAT A K++++ V N+
Sbjct: 237 AFLPKYKNLTAKGKAAILLYHAVPDYYSLQLLKSNSGKVSTLATASVAKKDYSYDVSNDR 296
Query: 62 DKVTIKTDASDGVARIKDTVYDKDPIAIYAVDTVLEPVELFE 103
D V + T + A + TV D DP+A+YA+ L+P ELF+
Sbjct: 297 DSVLLDTKVNS--ASVTATVKDADPLAVYAISKFLQPKELFK 336
>Os06g0285100
Length = 244
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 5/106 (4%)
Query: 1 MRAFMPTYKNLTADGKASLLLFHAVPVYYSLRSLKSNNGVMNTLATD--GSAKNFNFTVQ 58
+ AF+P ++ LTAD K +LLL+HAV ++S +LK+ NG +NTLATD G K N T++
Sbjct: 62 VAAFIPAFRGLTADAKVALLLYHAVAAHFSEEALKAINGEVNTLATDGGGGGKVLNLTIE 121
Query: 59 --NEGDKVTIKTDASDG-VARIKDTVYDKDPIAIYAVDTVLEPVEL 101
++G T+K +S G VAR+ T+ D DP A+Y +D VL P+++
Sbjct: 122 EDDDGAGATVKLSSSSGNVARVTKTIQDADPHAVYLIDAVLMPLDV 167
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,746,903
Number of extensions: 106815
Number of successful extensions: 453
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 5
Length of query: 181
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 86
Effective length of database: 12,075,471
Effective search space: 1038490506
Effective search space used: 1038490506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)