BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0143200 Os07g0143200|Os07g0143200
(447 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0143200 Basic helix-loop-helix dimerisation region bHL... 641 0.0
AK060245 252 3e-67
Os03g0782500 Basic helix-loop-helix dimerisation region bHL... 211 9e-55
Os12g0610200 Similar to Phytochrome-interacting factor 3 (P... 127 2e-29
Os01g0286100 Basic helix-loop-helix dimerisation region bHL... 117 1e-26
Os05g0139100 Basic helix-loop-helix dimerisation region bHL... 106 3e-23
Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-l... 103 3e-22
Os06g0164400 Basic helix-loop-helix dimerisation region bHL... 99 5e-21
Os06g0184000 79 1e-14
Os03g0797600 Similar to Helix-loop-helix protein homolog 74 2e-13
Os06g0193400 Similar to Helix-loop-helix protein homolog 71 1e-12
Os02g0795800 71 2e-12
Os02g0705500 Basic helix-loop-helix dimerisation region bHL... 70 3e-12
Os10g0556200 Similar to SPATULA 70 4e-12
Os08g0536800 Similar to TA1 protein (Fragment) 69 5e-12
Os08g0487700 Similar to TA1 protein (Fragment) 69 6e-12
Os09g0417400 Basic helix-loop-helix dimerisation region bHL... 69 8e-12
>Os07g0143200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 447
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/447 (74%), Positives = 334/447 (74%)
Query: 1 MDAGATARXXXXXAMMMNQKKPLLSDGELVELLWQDGGVVAHAQTRHRSSDVLARSGVTG 60
MDAGATAR AMMMNQKKPLLSDGELVELLWQDGGVVAHAQTRHRSSDVLARSGVTG
Sbjct: 1 MDAGATARSSSSSAMMMNQKKPLLSDGELVELLWQDGGVVAHAQTRHRSSDVLARSGVTG 60
Query: 61 EEETASAWFXXXXXXXXXXXXXXXXXMGRDIYSQLWHSFANVDGHXXXXXXXXXXXXXXX 120
EEETASAWF MGRDIYSQLWHSFANVDGH
Sbjct: 61 EEETASAWFADGGGGGGGDDDALGLGMGRDIYSQLWHSFANVDGHAAGALALATPTPTPR 120
Query: 121 XXXXSDDVSSRLDEADLSICGSNAVVAPALPAXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
SDDVSSRLDEADLSICGSNAVVAPALPA
Sbjct: 121 AAARSDDVSSRLDEADLSICGSNAVVAPALPADDDDDIDAAAPREEEEEEEEGPGAARAA 180
Query: 181 XXXXXXXXXXXXXXYPLFKRGREELVDSLSEVADEXXXXXXXXXXXXXXXXEVHNLSERR 240
YPLFKRGREELVDSLSEVADE EVHNLSERR
Sbjct: 181 GASSSGGSGSGSGSYPLFKRGREELVDSLSEVADETRPSKRPAAKRRTRAAEVHNLSERR 240
Query: 241 RRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTH 300
RRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTH
Sbjct: 241 RRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTH 300
Query: 301 QLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQN 360
QLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQN
Sbjct: 301 QLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQN 360
Query: 361 DNRIRGPRNPFLHCNDTLTATAQVDYYVKFHHYRSXXXXXXXXXXXXXXSGARHRQYVKN 420
DNRIRGPRNPFLHCNDTLTATAQVDYYVKFHHYRS SGARHRQYVKN
Sbjct: 361 DNRIRGPRNPFLHCNDTLTATAQVDYYVKFHHYRSFRLQFLFILQYQFFSGARHRQYVKN 420
Query: 421 IVAVWTQLEPASQKLHKNTTVTVSLFF 447
IVAVWTQLEPASQKLHKNTTVTVSLFF
Sbjct: 421 IVAVWTQLEPASQKLHKNTTVTVSLFF 447
>AK060245
Length = 163
Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 267 ILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQM 326
ILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQM
Sbjct: 12 ILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQM 71
Query: 327 QRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQNDNRIRGPRNPFLHCNDTLTATAQV 384
QRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQNDNRIRGPRNPFLHCNDTLTATAQV
Sbjct: 72 QRTTYYMNNSLPNQMPQIPSPAMNAPSVPDDMQNDNRIRGPRNPFLHCNDTLTATAQV 129
>Os03g0782500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 410
Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 106/153 (69%), Positives = 121/153 (79%), Gaps = 4/153 (2%)
Query: 232 EVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGI 291
EVHNLSERRRRDRINEK+RALQEL+PHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTG+
Sbjct: 223 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGM 282
Query: 292 VPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAMNA 351
PMMFPG HQ MPPM +G+N+ACMP AQGL+ M R YMN+S+PN +P SPAMN
Sbjct: 283 APMMFPGAHQFMPPMAVGMNSACMPA--AQGLSHMSRLP-YMNHSMPNHIPLNSSPAMNP 339
Query: 352 PSVPDDMQNDNRIRGPRNPFLHCNDTLTATAQV 384
+V + MQN ++R NPFLH + T QV
Sbjct: 340 MNVANQMQNI-QLREASNPFLHPDGWQTVPPQV 371
>Os12g0610200 Similar to Phytochrome-interacting factor 3 (Phytochrome-associated
protein 3) (Basic helix-loop-helix protein 8) (bHLH8)
(AtbHLH008)
Length = 445
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/80 (75%), Positives = 69/80 (86%), Gaps = 4/80 (5%)
Query: 232 EVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGI 291
EVHNLSERRRRDRINEK++ALQEL+PHCNKTDKAS+LDEAIEYLKSLQ+Q+Q+MWM G+
Sbjct: 272 EVHNLSERRRRDRINEKMKALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMMWMGGGM 331
Query: 292 VP--MMFP--GTHQLMPPMG 307
P +MFP G HQ M MG
Sbjct: 332 APPAVMFPAAGVHQYMQRMG 351
>Os01g0286100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 637
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 81/128 (63%), Gaps = 12/128 (9%)
Query: 232 EVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTG- 290
EVHNLSERRRRDRINEK+RALQEL+P+CNK DKAS+LDEAIEYLK+LQ+QVQ+M M TG
Sbjct: 387 EVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQMMSMGTGL 446
Query: 291 -IVPMMFPGT--HQLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSP 347
I PM+ P H +PPM A P + M+N+ QMP +P
Sbjct: 447 CIPPMLLPTAMQHLQIPPM------AHFP--HLGMGLGYGMGVFDMSNTGALQMPPMPGA 498
Query: 348 AMNAPSVP 355
P +P
Sbjct: 499 HFPCPMIP 506
>Os05g0139100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 505
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 57/60 (95%)
Query: 232 EVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGI 291
EVHNLSERRRRDRINEK+RALQEL+P+CNK DKAS+L+EAIEYLK+LQ+QVQ+M M TG+
Sbjct: 338 EVHNLSERRRRDRINEKMRALQELIPNCNKIDKASMLEEAIEYLKTLQLQVQMMSMGTGM 397
>Os04g0618600 Similar to Long hypocotyl in far-red 1 (bHLH-like protein HFR1)
(Reduced phytochrome signaling) (Basic helix-loop-helix
FBI1 protein) (Basic helix-loop-helix protein 26)
(bHLH26) (AtbHLH026) (Reduced sensitivity to far-red
light)
Length = 181
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 59/72 (81%)
Query: 232 EVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGI 291
E HN SERRRRDRINEKL+ALQEL+P+C KTDK S+LDEAI+YLKSLQ+Q+Q++ M G+
Sbjct: 16 EFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSLQLQLQMLVMGKGM 75
Query: 292 VPMMFPGTHQLM 303
P++ P Q M
Sbjct: 76 APVVPPELQQYM 87
>Os06g0164400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 188
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 78/135 (57%), Gaps = 14/135 (10%)
Query: 232 EVHNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMTTGI 291
EVHNLSE+RRR +INEK++ALQ L+P+ NKTDKAS+LDEAIEYLK LQ+QVQ++ M G+
Sbjct: 29 EVHNLSEKRRRSKINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGV 88
Query: 292 V--PMMFPG------THQLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMN--NSLPNQM 341
P G Q+ +G T PG +NQ + + NS P
Sbjct: 89 YLNPSYLSGALEPAQASQMFAALGGNNVTVVHPGTVMPPVNQSSGAHHLFDPLNSPPQNQ 148
Query: 342 PQIPSPAMNAPSVPD 356
PQ ++ PSVP
Sbjct: 149 PQ----SLILPSVPS 159
>Os06g0184000
Length = 430
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 54/67 (80%), Gaps = 5/67 (7%)
Query: 234 HNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMT----- 288
H+++ER RR+RI E++++LQELVP+ NKTDKAS+LDE I+Y+K LQ+QV+++ M+
Sbjct: 225 HSIAERLRRERIAERMKSLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGA 284
Query: 289 TGIVPMM 295
G+ P++
Sbjct: 285 AGMAPLV 291
>Os03g0797600 Similar to Helix-loop-helix protein homolog
Length = 294
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 49/55 (89%)
Query: 234 HNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMT 288
H+++ER RR+RI E++RALQELVP+ NKTD+A++LDE ++Y+K L++QV+++ M+
Sbjct: 144 HSIAERLRRERIAERMRALQELVPNTNKTDRAAMLDEILDYVKFLRLQVKVLSMS 198
>Os06g0193400 Similar to Helix-loop-helix protein homolog
Length = 478
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 47/55 (85%)
Query: 234 HNLSERRRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMT 288
H+++ER RR++I+E+++ LQ LVP+ NK DKAS+LDE I+Y+K LQ+QV+++ M+
Sbjct: 327 HSIAERLRREKISERMKNLQVLVPNSNKADKASMLDEIIDYVKFLQLQVKVLSMS 381
>Os02g0795800
Length = 463
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 43/48 (89%)
Query: 241 RRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQIMWMT 288
RR+RI E+++ALQELVP+ NKTDKAS+LDE I+Y+K LQ+QV+++ M+
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMS 299
>Os02g0705500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 361
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 234 HNLSERRRRDRINEKLRALQELVPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM 287
H+L+ER RR+RI+E++R LQELVP CNK T KA +LDE I Y++SLQ QV+ + M
Sbjct: 175 HSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQSLQKQVEFLSM 229
>Os10g0556200 Similar to SPATULA
Length = 191
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 40/45 (88%)
Query: 240 RRRDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQI 284
+RRDRIN+K++ LQ+LVP+ +KTDKAS+LDE I+YLK LQ QVQ+
Sbjct: 12 KRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV 56
>Os08g0536800 Similar to TA1 protein (Fragment)
Length = 309
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 15/118 (12%)
Query: 234 HNLSERRRRDRINEKLRALQELVPHCNK-TDKASILDEAIEYLKSLQMQVQIMWM-TTGI 291
H+L+ER RR+RI+E++R LQ LVP C+K T KA ILDE I Y++SLQ QV+ + M +
Sbjct: 152 HSLAERVRRERISERMRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASM 211
Query: 292 VPMMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNNSLPNQMPQIPSPAM 349
P+++ G G+++ G Q + M + M N + NQ PS A+
Sbjct: 212 SPVLY----------GFGMDS---DGLHDQKIGGMFQEALAMPNPVLNQSSPAPSQAI 256
>Os08g0487700 Similar to TA1 protein (Fragment)
Length = 365
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 19/120 (15%)
Query: 234 HNLSERRRRDRINEKLRALQELVPHCNK-TDKASILDEAIEYLKSLQMQVQIMWMTTGIV 292
H+L+ER RR++I+E+++ LQ+LVP C+K T KA +LDE I Y++SLQ QV+ + M V
Sbjct: 187 HSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAV 246
Query: 293 P-----------------MMFPGTHQLMPPMGMGLNTACMPGAQAQGLNQMQRTTYYMNN 335
+ FPG PMG +T MPG Q +Q + M N
Sbjct: 247 NPRIDLDIESLVNNSKDVLRFPGQPSSA-PMGFSFSTEMMPGLQLSRPGILQGGVHGMIN 305
>Os09g0417400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 499
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 48/62 (77%), Gaps = 3/62 (4%)
Query: 234 HNLSERRRRDRINEKLRALQELVPHCNK---TDKASILDEAIEYLKSLQMQVQIMWMTTG 290
H+++ER RR+RI E+++ALQELVP+ NK TDKAS+LDE I+Y+K LQ+QV+ T
Sbjct: 261 HSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQLQVKASTYTKL 320
Query: 291 IV 292
++
Sbjct: 321 LI 322
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.130 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,243,676
Number of extensions: 378693
Number of successful extensions: 1037
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1051
Number of HSP's successfully gapped: 18
Length of query: 447
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 343
Effective length of database: 11,605,545
Effective search space: 3980701935
Effective search space used: 3980701935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)