BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0142000 Os07g0142000|AK059877
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0142000 Reticulon family protein 477 e-135
Os03g0781700 Reticulon family protein 351 3e-97
Os05g0526400 Reticulon family protein 192 2e-49
Os01g0736900 Reticulon family protein 184 4e-47
Os02g0265900 Reticulon family protein 177 8e-45
Os06g0503400 Reticulon family protein 170 8e-43
Os05g0550100 168 3e-42
Os01g0139000 Reticulon family protein 147 1e-35
Os05g0312500 Reticulon family protein 144 8e-35
Os01g0226300 Reticulon family protein 143 9e-35
Os03g0336600 Reticulon family protein 129 1e-30
Os01g0691400 Reticulon family protein 118 4e-27
Os01g0851300 Reticulon family protein 111 6e-25
Os04g0670000 Reticulon family protein 79 2e-15
Os04g0367400 Reticulon family protein 66 2e-11
>Os07g0142000 Reticulon family protein
Length = 246
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 235/246 (95%), Positives = 235/246 (95%)
Query: 1 MPEHSENAAANIVDSIVDAIADNLPKQKSVRFEDGSISDQAKRLFGGQKSVHHVLGGGKS 60
MPEHSENAAANIVDSIVDAIADNLPKQKSVRFEDGSISDQAKRLFGGQKSVHHVLGGGKS
Sbjct: 1 MPEHSENAAANIVDSIVDAIADNLPKQKSVRFEDGSISDQAKRLFGGQKSVHHVLGGGKS 60
Query: 61 ADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQFAWSTFAGMLNG 120
ADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQFAWSTFAGMLNG
Sbjct: 61 ADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQFAWSTFAGMLNG 120
Query: 121 SPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLVXXXXXXXXXXXS 180
SPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLV S
Sbjct: 121 SPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLVIAGFFAAAIIGS 180
Query: 181 WCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVLGKVPKGII 240
WCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVLGKVPKGII
Sbjct: 181 WCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVLGKVPKGII 240
Query: 241 KLKKSD 246
KLKKSD
Sbjct: 241 KLKKSD 246
>Os03g0781700 Reticulon family protein
Length = 247
Score = 351 bits (901), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 170/247 (68%), Positives = 200/247 (80%), Gaps = 1/247 (0%)
Query: 1 MPEHSENAAANIVDSIVDAIADNLPKQKSVRFEDGSISDQAK-RLFGGQKSVHHVLGGGK 59
M EHSE+A I+ SI+D IA+NLPKQKS +F+ G+ SD+ K +LFG QK++H VLGGGK
Sbjct: 1 MLEHSESATEKIMSSIMDTIAENLPKQKSGKFDVGAASDKMKEKLFGRQKTIHRVLGGGK 60
Query: 60 SADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQFAWSTFAGMLN 119
ADVLLWRNKKISSSVLA+ATA+WVFFEWLDYHFLTI F LVLGMVVQF WS F+ L+
Sbjct: 61 PADVLLWRNKKISSSVLALATAIWVFFEWLDYHFLTIVSFALVLGMVVQFVWSNFSSALS 120
Query: 120 GSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLVXXXXXXXXXXX 179
GSPSKVPRVELP+ELF NI A+GTQVNKFL LQDVSC R+LK+F+L
Sbjct: 121 GSPSKVPRVELPEELFVNIAVAVGTQVNKFLSFLQDVSCERNLKHFVLAIVGLWAAAVIG 180
Query: 180 SWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVLGKVPKGI 239
WCN LTVIYIGFV AHTLPVLYEK +++VD+FLYN LGLL++QYQKLD+GVL K+PKG
Sbjct: 181 GWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRDQYQKLDQGVLSKIPKGN 240
Query: 240 IKLKKSD 246
+K KKS+
Sbjct: 241 MKFKKSE 247
>Os05g0526400 Reticulon family protein
Length = 251
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 147/252 (58%), Gaps = 10/252 (3%)
Query: 1 MPEHSENAAANIVDSIVDAIADNLPKQKSVRF--------EDGSISDQAKRLFGGQKSVH 52
M EH E + +V+S++D I+D L + + + RLFG +K VH
Sbjct: 1 MAEHKEEES--LVESVMDKISDKLHGRGGSSSSSSDSDGERTADLKAKIYRLFGREKPVH 58
Query: 53 HVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQFAWS 112
VLGGGK AD+ LWRNKKIS VLA ATA+W+ FE +DYH LT+ C ++L + + F WS
Sbjct: 59 SVLGGGKPADLFLWRNKKISVGVLAGATAIWLLFEVMDYHLLTLLCHCIILTLAMLFLWS 118
Query: 113 TFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLVXXXX 172
+ +N SP +P V++P++L N+ ++ ++N+ TL+++ G DLK FL+V
Sbjct: 119 NASTFINKSPPNIPEVKIPEDLAVNVARSLRFEINRGFATLREIGQGHDLKKFLIVVVGL 178
Query: 173 XXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVL 232
S CN LT+ YI F+ +T+PVLYEK ++++D F + L+ Y D+ L
Sbjct: 179 WVLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELKKYYAIFDEKCL 238
Query: 233 GKVPKGIIKLKK 244
K+PKG +K KK
Sbjct: 239 SKIPKGPLKNKK 250
>Os01g0736900 Reticulon family protein
Length = 253
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 128/202 (63%)
Query: 43 RLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLV 102
RLFG ++ VH VLGGGK AD++LWRNKKIS VLA ATA+W+ FE ++YH LT+ C L+
Sbjct: 51 RLFGRERPVHSVLGGGKPADLVLWRNKKISGGVLAGATAIWLLFEIMEYHLLTLVCHCLI 110
Query: 103 LGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDL 162
L + V F WS + ++ SP +P V++P++L NI ++ ++N+ TL+++ GRDL
Sbjct: 111 LSLAVLFLWSNASTFIHKSPPNIPEVKIPEDLTVNIALSLRYEINRGFATLREIGHGRDL 170
Query: 163 KNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQN 222
K FL+V S CN LT+ YI FV +T+PVLYEK ++KVD F +
Sbjct: 171 KKFLIVIAGLWILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKK 230
Query: 223 QYQKLDKGVLGKVPKGIIKLKK 244
Y ++ L K+PKG +K KK
Sbjct: 231 YYALFEEKCLSKIPKGPLKDKK 252
>Os02g0265900 Reticulon family protein
Length = 230
Score = 177 bits (448), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 127/214 (59%)
Query: 33 EDGSISDQAKRLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYH 92
E+ + + RL GG KSVH LGGGK+ADVLLW++KKIS++V+ AT +WV FE +DYH
Sbjct: 17 EEAAARPRGFRLLGGDKSVHQALGGGKAADVLLWKDKKISAAVIGGATVLWVLFEVVDYH 76
Query: 93 FLTIACFVLVLGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGT 152
FLT+ VL+ + + F WS + SP +P V++ ++L N+ A+ T +N+ L
Sbjct: 77 FLTLISHVLIGVLAILFLWSKATIFIKKSPPNIPEVKISEDLAVNVALALRTDINQALHL 136
Query: 153 LQDVSCGRDLKNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEF 212
L+++S G DL FL V S C+ LT+ Y+ + HT+P+LY K Q+KVD F
Sbjct: 137 LREISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVPILYHKYQDKVDHF 196
Query: 213 LYNTLGLLQNQYQKLDKGVLGKVPKGIIKLKKSD 246
L QY LD VL K+P+G K KK +
Sbjct: 197 AGKAHVELSRQYSVLDAKVLSKIPRGPAKDKKQN 230
>Os06g0503400 Reticulon family protein
Length = 265
Score = 170 bits (431), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 121/203 (59%)
Query: 43 RLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLV 102
RL G SVH LGGGK+ADVLLW++KK S+ V+ AT +W+ FE LDYH LT+ V++
Sbjct: 63 RLLGEDTSVHKALGGGKTADVLLWKDKKTSAVVIGGATVIWILFEVLDYHLLTLLSHVMI 122
Query: 103 LGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDL 162
+ + F WS + SP +P V++P+++ N+ A+ + +N+ L ++++ G DL
Sbjct: 123 GALAILFLWSKATTFIKKSPPDIPVVQIPEDVAVNVSRALRSDINRALHLFREIALGHDL 182
Query: 163 KNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQN 222
K FL V S C+ LT+IY+ + HT+P+LY+K Q+KVD F
Sbjct: 183 KKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHSEACK 242
Query: 223 QYQKLDKGVLGKVPKGIIKLKKS 245
Y+ LD VL K+P+G +K KK+
Sbjct: 243 HYEVLDAKVLSKIPRGPVKPKKN 265
>Os05g0550100
Length = 788
Score = 168 bits (425), Expect = 3e-42, Method: Composition-based stats.
Identities = 76/203 (37%), Positives = 124/203 (61%)
Query: 43 RLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLV 102
RLF QK VH +LGG K AD++LWR++ +S+ +LA AT +W F+ +Y+ +T+ C + +
Sbjct: 18 RLFHRQKPVHKILGGRKVADIMLWRDRNLSAGILAGATLIWFLFDVAEYNLVTLLCHIAL 77
Query: 103 LGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDL 162
LGM+V F WS A + + +P ++P V + + F + + ++V F L D+SCG++L
Sbjct: 78 LGMLVLFIWSNAAPLFDRAPPRIPEVIVSEHAFRELALTLHSKVAHFSAVLYDISCGKEL 137
Query: 163 KNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQN 222
+ FL V C+ T++Y+GF+CA TLP LYE+ + +VD + L+
Sbjct: 138 RKFLAVIGSLWILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVDHLVAKGGQDLKK 197
Query: 223 QYQKLDKGVLGKVPKGIIKLKKS 245
Y+K+D VL K+P+G +K K+S
Sbjct: 198 FYKKIDSNVLNKIPRGPVKTKES 220
>Os01g0139000 Reticulon family protein
Length = 213
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 119/201 (59%)
Query: 38 SDQAKRLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIA 97
+ + +LFG ++ +H LGG K+AD++LWR +++S+S++A AT W FE +YHFL++A
Sbjct: 7 THRTTKLFGRERPLHDALGGHKAADIILWRERRVSASIVAGATVAWYLFEVAEYHFLSLA 66
Query: 98 CFVLVLGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVS 157
C++ +LGM+V F W+ + N ++P + + + + A+ +++ F+ L D++
Sbjct: 67 CYLAMLGMLVVFIWANASAFFNLPAPRIPEIFVSERTTRQVILALHSRLTWFVHRLYDIA 126
Query: 158 CGRDLKNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTL 217
CG+D+K F+L S + LT++Y+ + TLPV+YE + +VD + +
Sbjct: 127 CGKDIKMFILTVFSLFIASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAV 186
Query: 218 GLLQNQYQKLDKGVLGKVPKG 238
L++ +D GV K+P+G
Sbjct: 187 HDLRSHVGDIDSGVFKKIPRG 207
>Os05g0312500 Reticulon family protein
Length = 251
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 111/194 (57%)
Query: 43 RLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLV 102
RLFG +HHVLGGGK+AD++LWR+K+ S S+LA T +W+ FE + YH LT C L+
Sbjct: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLM 109
Query: 103 LGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDL 162
+ + V F W+ A +N P K P L + I + ++N+ TL+ V+ G+DL
Sbjct: 110 VFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDL 169
Query: 163 KNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQN 222
K +L+ S + LT+ Y F+ A+TLP+LYEK +++VD L L+
Sbjct: 170 KTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKK 229
Query: 223 QYQKLDKGVLGKVP 236
QY LD +L K+P
Sbjct: 230 QYAVLDHKLLSKIP 243
>Os01g0226300 Reticulon family protein
Length = 178
Score = 143 bits (361), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 105/177 (59%)
Query: 68 NKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQFAWSTFAGMLNGSPSKVPR 127
N+ IS+ VL ATA+W+ FE L YH LT C L+ + + F WS + +N SP ++P
Sbjct: 1 NRNISAGVLGGATAIWILFELLGYHLLTFVCHGLIFSLGLLFLWSNASSFINKSPPRIPE 60
Query: 128 VELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLVXXXXXXXXXXXSWCNLLTV 187
V +P++L NI + ++N+ L+ ++ GRD+K FL+V S CN LT+
Sbjct: 61 VIIPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTL 120
Query: 188 IYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVLGKVPKGIIKLKK 244
+YI FV HT+P+LYEK ++++D + ++ QY LD VL KVP+G +K KK
Sbjct: 121 VYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLSKVPRGPLKDKK 177
>Os03g0336600 Reticulon family protein
Length = 231
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 114/211 (54%), Gaps = 5/211 (2%)
Query: 34 DGSISDQAKRLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHF 93
D S S A RL SVH + GGGK+AD++LW+ +++ V+ AT W FE F
Sbjct: 25 DPSTSGTASRL-----SVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSF 79
Query: 94 LTIACFVLVLGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTL 153
LT+ VL++ +VVQF AG+LN P +P + L +E+ +N ++ +VN L
Sbjct: 80 LTVCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIA 139
Query: 154 QDVSCGRDLKNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFL 213
D++ G+D + F V ++C+ +T+ Y G + T+P LY KNQE+VD +
Sbjct: 140 HDITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYA 199
Query: 214 YNTLGLLQNQYQKLDKGVLGKVPKGIIKLKK 244
+ Y+ +D+ V+ ++P+ I+ K+
Sbjct: 200 GMVHRNISRHYKIVDENVMSRLPRSFIRDKE 230
>Os01g0691400 Reticulon family protein
Length = 202
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 42/226 (18%)
Query: 31 RFEDGSISDQAKRL-FGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWL 89
F S SDQ R+ F G KS+H +LGGG+ +
Sbjct: 4 HFPRDSDSDQNVRMPFHGHKSIHKLLGGGQ-----------------------------V 34
Query: 90 DYHFLTIACFVLVLGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKF 149
+Y+ + + C + +L M+V F WS A +L+ +P ++P + + + F + + ++
Sbjct: 35 EYNIIPLLCQIAILAMLVIFIWSNAAPLLDRAPPRIPEIIISEHAFREMALTVHYKLTYT 94
Query: 150 LGTLQDVSCGRDLKNFLL------------VXXXXXXXXXXXSWCNLLTVIYIGFVCAHT 197
+ L D++CG+DLK FLL V S C+L +++YIGF+CAHT
Sbjct: 95 VSVLYDIACGKDLKRFLLFWTNNQIVYDIKVVGSLLVLSAIGSSCSLTSLLYIGFLCAHT 154
Query: 198 LPVLYEKNQEKVDEFLYNTLGLLQNQYQKLDKGVLGKVPKGIIKLK 243
LPVLY++ + +VD + ++ Y+K+D +L K+P+G +K K
Sbjct: 155 LPVLYQRYKTEVDHLVAKGSDDIKKFYKKVDSNLLNKIPRGPVKTK 200
>Os01g0851300 Reticulon family protein
Length = 203
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 98/177 (55%), Gaps = 1/177 (0%)
Query: 38 SDQAKRLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLD-YHFLTI 96
SDQ RL G Q+S+H +LGGG ADV+LWR K+++ LA A WV F L Y L+
Sbjct: 4 SDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTLLSF 63
Query: 97 ACFVLVLGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDV 156
VL++ +VV F W+ A +LN P VP +++ ++ + +A+G ++K L +++
Sbjct: 64 VSSVLMIVLVVLFVWAKAARLLNRPPPPVPLIKISEDSMSKAAAAVGNILHKALQGFENI 123
Query: 157 SCGRDLKNFLLVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFL 213
+ G+D F + +L+T++Y V A T+P L +K +E + +FL
Sbjct: 124 AHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL 180
>Os04g0670000 Reticulon family protein
Length = 199
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 89/165 (53%)
Query: 47 GQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMV 106
++S+H +LGGG AD++LWR + +S++ +A ATAVW FE Y F ++ L+L +
Sbjct: 5 SRRSLHALLGGGAVADLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLLLVA 64
Query: 107 VQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFL 166
+ F W+ A +LN +P++E+ D + +NK L D++ RD F+
Sbjct: 65 ILFFWAKSASLLNRPLPPLPKLEVSDVVVEKAADRALVWINKVLAVGHDIAIKRDRSVFI 124
Query: 167 LVXXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDE 211
V N LT+IYIG + + +P LYEK Q++VDE
Sbjct: 125 KVILILWVVSYIGMLFNFLTLIYIGVMFSLLVPPLYEKYQDQVDE 169
>Os04g0367400 Reticulon family protein
Length = 213
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 92/199 (46%), Gaps = 10/199 (5%)
Query: 56 GGGKSA-------DVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLVLGMVVQ 108
GGG S+ DV++WR +S+ +LA + W+ F Y FL++A VL+L + V
Sbjct: 13 GGGVSSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYTFLSLASNVLLLLLTVL 72
Query: 109 FAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDLKNFLLV 168
F W+ A +LN +P + + ++ + + + + +N D++ G+D F V
Sbjct: 73 FLWAKAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQV 132
Query: 169 XXXXXXXXXXXSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFL---YNTLGLLQNQYQ 225
S + T+ Y V T+P LY+K +E +D ++ Y L + + Y+
Sbjct: 133 FLSLWIISIIGSLTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNLQMYEMVYE 192
Query: 226 KLDKGVLGKVPKGIIKLKK 244
+ + +I++ K
Sbjct: 193 RFSAKCFHRARDLVIEVLK 211
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,835,869
Number of extensions: 304172
Number of successful extensions: 770
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 15
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)