Os05g0312500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os05g0312500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.66 | 0.338 | 2.65 | 2.04 | 0.0782 | -26.2 | -0.464 | 160 | 0.0206 | 6.55 | 994.7 | 745 | -- | -- |
| 55.4 | 0.349 | 3 | -0.0698 | 0.0963 | 0.0437 | -0.392 | -- | 0.015 | 6.81 | 994.7 | 745 | -- | -- |
| 51.97 | 0.336 | 2.65 | 2.01 | 0.0975 | -25.7 | -- | 157 | 0.0243 | 9.06 | 994.8 | 738 | -- | -- |
| 54.45 | 0.344 | 3 | -0.1 | 0.109 | 0.509 | -- | -- | 0.0176 | 7 | 996.7 | 908 | -- | -- |
| 52.5 | 0.337 | 2.65 | 2.01 | -- | -25.8 | -- | 157 | 0.0225 | -- | 994.8 | 734 | -- | -- |
| 55.41 | 0.349 | 3 | -0.0695 | 0.096 | -- | -0.394 | -- | 0.0149 | 6.8 | -- | -- | -- | -- |
| 55.73 | 0.35 | 3 | -0.0749 | 0.0995 | -- | -- | -- | 0.0166 | 8.17 | -- | -- | -- | -- |
| 54.91 | 0.345 | 3 | -0.0931 | -- | 0.496 | -- | -- | 0.0247 | -- | 996.9 | 922 | -- | -- |
| 54.59 | 0.344 | 3 | -- | 0.0904 | 0.47 | -- | -- | 0.0257 | 8.53 | 996.7 | 905 | -- | -- |
| 56.27 | 0.351 | 3 | -0.0741 | -- | -- | -- | -- | 0.0178 | -- | -- | -- | -- | -- |
| 55.87 | 0.35 | 3 | -- | 0.0991 | -- | -- | -- | 0.0249 | 8.23 | -- | -- | -- | -- |
| 55.14 | 0.346 | 3 | -- | -- | 0.477 | -- | -- | 0.0359 | -- | 996.9 | 920 | -- | -- |
| 56.42 | 0.351 | 3 | -- | -- | -- | -- | -- | 0.026 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.10 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 2 |
| 2 | 40.12 | temperature | 20 | 30 | < th | dose independent | rect. | 7 | 1 |
| 14 | 42.05 | radiation | 1 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 37 | 45.57 | humidity | 90 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 38 | 45.58 | humidity | 90 | 30 | > th | dose dependent | rect. | 7 | 3 |
| 48 | 46.27 | radiation | 1 | 90 | < th | dose independent | rect. | 6 | 1 |
| 74 | 47.10 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 103 | 47.97 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 1 |
| 104 | 47.97 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 3 | 1 |
| 114 | 47.97 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 115 | 47.97 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 129 | 47.99 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 1 |
| 141 | 48.10 | temperature | 25 | 10 | > th | dose independent | rect. | 3 | 1 |
| 174 | 48.72 | humidity | 90 | 10 | > th | dose independent | rect. | 7 | 3 |
| 176 | 48.73 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 7 | 1 |
| 181 | 48.74 | humidity | 90 | 10 | > th | dose independent | rect. | 7 | 1 |
| 336 | 51.21 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 343 | 51.28 | atmosphere | 1010 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 416 | 51.65 | atmosphere | 995 | 720 | < th | dose independent | rect. | 16 | 1 |
| 422 | 51.65 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 530 | 51.81 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 1 |
| 566 | 51.85 | atmosphere | 995 | 720 | < th | dose dependent | sin | 9 | NA |
| 601 | 51.96 | atmosphere | 995 | 720 | > th | dose independent | sin | 9 | NA |
| 602 | 51.96 | atmosphere | 995 | 720 | < th | dose independent | sin | 9 | NA |
| 618 | 52.03 | humidity | 90 | 90 | > th | dose dependent | rect. | 6 | 17 |
| 677 | 52.20 | humidity | 90 | 30 | < th | dose independent | rect. | 2 | 3 |
| 695 | 52.29 | radiation | 1 | 90 | < th | dose independent | rect. | 6 | 11 |
| 708 | 52.35 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 11 |
| 733 | 52.43 | temperature | 30 | 10 | < th | dose independent | rect. | 8 | 23 |
| 757 | 52.50 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 9 |
| 766 | 52.53 | wind | 5 | 10 | < th | dose independent | rect. | 7 | 1 |
| 841 | 52.68 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 8 |
| 889 | 52.76 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 8 | 23 |
| 899 | 52.78 | atmosphere | 995 | 720 | > th | dose independent | sin | 13 | NA |
| 900 | 52.78 | wind | 1 | 90 | > th | dose independent | rect. | 7 | 1 |
| 906 | 52.79 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 919 | 52.81 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 5 |