BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0312500 Os05g0312500|AK069307
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0312500 Reticulon family protein 449 e-127
Os05g0526400 Reticulon family protein 244 4e-65
Os01g0736900 Reticulon family protein 235 2e-62
Os01g0226300 Reticulon family protein 202 2e-52
Os02g0265900 Reticulon family protein 191 6e-49
Os06g0503400 Reticulon family protein 186 1e-47
Os05g0550100 179 2e-45
Os01g0139000 Reticulon family protein 166 1e-41
Os03g0781700 Reticulon family protein 163 1e-40
Os07g0142000 Reticulon family protein 159 2e-39
Os01g0851300 Reticulon family protein 124 7e-29
Os03g0336600 Reticulon family protein 105 3e-23
Os01g0691400 Reticulon family protein 99 3e-21
Os04g0670000 Reticulon family protein 96 2e-20
Os04g0367400 Reticulon family protein 93 2e-19
>Os05g0312500 Reticulon family protein
Length = 251
Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust.
Identities = 224/251 (89%), Positives = 224/251 (89%)
Query: 1 MMSEGEEHGSLLEKINDKIHEFXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFGRTNPLHH 60
MMSEGEEHGSLLEKINDKIHEF RLFGRTNPLHH
Sbjct: 1 MMSEGEEHGSLLEKINDKIHEFKKGSSSSSSSDSDDDKKHHHKSKSKKKRLFGRTNPLHH 60
Query: 61 VLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFVWAN 120
VLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFVWAN
Sbjct: 61 VLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFVWAN 120
Query: 121 AASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVAGLW 180
AASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVAGLW
Sbjct: 121 AASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVAGLW 180
Query: 181 FVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHKLLS 240
FVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHKLLS
Sbjct: 181 FVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHKLLS 240
Query: 241 KIPMLAEKKQH 251
KIPMLAEKKQH
Sbjct: 241 KIPMLAEKKQH 251
>Os05g0526400 Reticulon family protein
Length = 251
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 117/242 (48%), Positives = 156/242 (64%)
Query: 2 MSEGEEHGSLLEKINDKIHEFXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFGRTNPLHHV 61
M+E +E SL+E + DKI + RLFGR P+H V
Sbjct: 1 MAEHKEEESLVESVMDKISDKLHGRGGSSSSSSDSDGERTADLKAKIYRLFGREKPVHSV 60
Query: 62 LGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFVWANA 121
LGGGK ADL LWR+K+ S +LAG T IWLLFE + YHLLT CH +++ L + F+W+NA
Sbjct: 61 LGGGKPADLFLWRNKKISVGVLAGATAIWLLFEVMDYHLLTLLCHCIILTLAMLFLWSNA 120
Query: 122 ASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVAGLWF 181
++FIN+ PP P+ + E + +A LR EIN F TLR + G DLK +L+ V GLW
Sbjct: 121 STFINKSPPNIPEVKIPEDLAVNVARSLRFEINRGFATLREIGQGHDLKKFLIVVVGLWV 180
Query: 182 VSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHKLLSK 241
+S++GSC +FLTL Y +F++ YT+P+LYEKYED++D GEKA+IELKK YA+ D K LSK
Sbjct: 181 LSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELKKYYAIFDEKCLSK 240
Query: 242 IP 243
IP
Sbjct: 241 IP 242
>Os01g0736900 Reticulon family protein
Length = 253
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 158/244 (64%), Gaps = 2/244 (0%)
Query: 2 MSEGEEHGSLLEKINDKIH--EFXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFGRTNPLH 59
M+E +E S++EK+++K+H RLFGR P+H
Sbjct: 1 MAEHKEEQSVMEKLSEKLHGDSSSSSSDSDDDKKGSSSSSAAAAMKAKIYRLFGRERPVH 60
Query: 60 HVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFVWA 119
VLGGGK ADLVLWR+K+ SG +LAG T IWLLFE + YHLLT CH L++ L V F+W+
Sbjct: 61 SVLGGGKPADLVLWRNKKISGGVLAGATAIWLLFEIMEYHLLTLVCHCLILSLAVLFLWS 120
Query: 120 NAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVAGL 179
NA++FI++ PP P+ + E + IA LR EIN F TLR + G+DLK +L+ +AGL
Sbjct: 121 NASTFIHKSPPNIPEVKIPEDLTVNIALSLRYEINRGFATLREIGHGRDLKKFLIVIAGL 180
Query: 180 WFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHKLL 239
W +S++GS +FLTL Y +F+ YT+P+LYEKYED+VD GEKA IE KK YA+ + K L
Sbjct: 181 WILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFKKYYALFEEKCL 240
Query: 240 SKIP 243
SKIP
Sbjct: 241 SKIP 244
>Os01g0226300 Reticulon family protein
Length = 178
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 130/178 (73%), Gaps = 2/178 (1%)
Query: 75 DKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFVWANAASFINRGPPKFPD 134
++ S +L G T IW+LFE +GYHLLTF CH L+ L + F+W+NA+SFIN+ PP+ P+
Sbjct: 1 NRNISAGVLGGATAIWILFELLGYHLLTFVCHGLIFSLGLLFLWSNASSFINKSPPRIPE 60
Query: 135 AILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVAGLWFVSIIGSCFSFLTL 194
I+ E + IA R EIN AF LR +A G+D+K +L+ +AGLW +S++GSC +FLTL
Sbjct: 61 VIIPEDLVVNIALSTRYEINRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTL 120
Query: 195 SYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHKLLSKIPM--LAEKKQ 250
Y +F++ +T+P+LYEKYED++D GEK +E+KKQYAVLD K+LSK+P L +KK
Sbjct: 121 VYIVFVVLHTVPILYEKYEDQIDSYGEKGWVEIKKQYAVLDAKVLSKVPRGPLKDKKH 178
>Os02g0265900 Reticulon family protein
Length = 230
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 131/204 (64%), Gaps = 2/204 (0%)
Query: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLM 109
RL G +H LGGGKAAD++LW+DK+ S +++ G TV+W+LFE + YH LT H L+
Sbjct: 27 RLLGGDKSVHQALGGGKAADVLLWKDKKISAAVIGGATVLWVLFEVVDYHFLTLISHVLI 86
Query: 110 VFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDL 169
L + F+W+ A FI + PP P+ +SE + +A LR +IN+A LR ++ G DL
Sbjct: 87 GVLAILFLWSKATIFIKKSPPNIPEVKISEDLAVNVALALRTDINQALHLLREISLGHDL 146
Query: 170 KTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKK 229
+L + LW +S IGS FLTL Y LM +T+P+LY KY+D+VD KA +EL +
Sbjct: 147 MKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVPILYHKYQDKVDHFAGKAHVELSR 206
Query: 230 QYAVLDHKLLSKIPM--LAEKKQH 251
QY+VLD K+LSKIP +KKQ+
Sbjct: 207 QYSVLDAKVLSKIPRGPAKDKKQN 230
>Os06g0503400 Reticulon family protein
Length = 265
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 88/194 (45%), Positives = 122/194 (62%)
Query: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLM 109
RL G +H LGGGK AD++LW+DK+TS ++ G TVIW+LFE + YHLLT H ++
Sbjct: 63 RLLGEDTSVHKALGGGKTADVLLWKDKKTSAVVIGGATVIWILFEVLDYHLLTLLSHVMI 122
Query: 110 VFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDL 169
L + F+W+ A +FI + PP P + E + ++ LR +IN A R +A G DL
Sbjct: 123 GALAILFLWSKATTFIKKSPPDIPVVQIPEDVAVNVSRALRSDINRALHLFREIALGHDL 182
Query: 170 KTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKK 229
K +L + LW +S +GSC FLTL Y LM +T+P+LY+KY+D+VD +A E K
Sbjct: 183 KKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHSEACK 242
Query: 230 QYAVLDHKLLSKIP 243
Y VLD K+LSKIP
Sbjct: 243 HYEVLDAKVLSKIP 256
>Os05g0550100
Length = 788
Score = 179 bits (453), Expect = 2e-45, Method: Composition-based stats.
Identities = 84/194 (43%), Positives = 121/194 (62%)
Query: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLM 109
RLF R P+H +LGG K AD++LWRD+ S ILAG T+IW LF+ Y+L+T CH +
Sbjct: 18 RLFHRQKPVHKILGGRKVADIMLWRDRNLSAGILAGATLIWFLFDVAEYNLVTLLCHIAL 77
Query: 110 VFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDL 169
+ + V F+W+NAA +R PP+ P+ I+SE ++A L ++ L ++ GK+L
Sbjct: 78 LGMLVLFIWSNAAPLFDRAPPRIPEVIVSEHAFRELALTLHSKVAHFSAVLYDISCGKEL 137
Query: 170 KTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKK 229
+ +L + LW +++IG SF TL Y FL A TLP LYE+YE EVD + K +LKK
Sbjct: 138 RKFLAVIGSLWILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVDHLVAKGGQDLKK 197
Query: 230 QYAVLDHKLLSKIP 243
Y +D +L+KIP
Sbjct: 198 FYKKIDSNVLNKIP 211
>Os01g0139000 Reticulon family protein
Length = 213
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 118/194 (60%)
Query: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLM 109
+LFGR PLH LGG KAAD++LWR+++ S SI+AG TV W LFE YH L+ C+ M
Sbjct: 12 KLFGRERPLHDALGGHKAADIILWRERRVSASIVAGATVAWYLFEVAEYHFLSLACYLAM 71
Query: 110 VFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDL 169
+ + V F+WANA++F N P+ P+ +SE ++ L + L +A GKD+
Sbjct: 72 LGMLVVFIWANASAFFNLPAPRIPEIFVSERTTRQVILALHSRLTWFVHRLYDIACGKDI 131
Query: 170 KTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKK 229
K +++TV L+ S+I SCFS LTL Y + L TLP++YE YE EVD + A+ +L+
Sbjct: 132 KMFILTVFSLFIASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTAVHDLRS 191
Query: 230 QYAVLDHKLLSKIP 243
+D + KIP
Sbjct: 192 HVGDIDSGVFKKIP 205
>Os03g0781700 Reticulon family protein
Length = 247
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 123/194 (63%)
Query: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLM 109
+LFGR +H VLGGGK AD++LWR+K+ S S+LA T IW+ FE + YH LT +L+
Sbjct: 44 KLFGRQKTIHRVLGGGKPADVLLWRNKKISSSVLALATAIWVFFEWLDYHFLTIVSFALV 103
Query: 110 VFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDL 169
+ + V FVW+N +S ++ P K P L E + IA + ++N+ L+ V+ ++L
Sbjct: 104 LGMVVQFVWSNFSSALSGSPSKVPRVELPEELFVNIAVAVGTQVNKFLSFLQDVSCERNL 163
Query: 170 KTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKK 229
K +++ + GLW ++IG +FLT+ Y F+ A+TLP+LYEKYED+VD L L+
Sbjct: 164 KHFVLAIVGLWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFLYNILGLLRD 223
Query: 230 QYAVLDHKLLSKIP 243
QY LD +LSKIP
Sbjct: 224 QYQKLDQGVLSKIP 237
>Os07g0142000 Reticulon family protein
Length = 246
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 119/194 (61%)
Query: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLM 109
RLFG +HHVLGGGK+AD++LWR+K+ S S+LA T +W+ FE + YH LT C L+
Sbjct: 43 RLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWLDYHFLTIACFVLV 102
Query: 110 VFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDL 169
+ + V F W+ A +N P K P L + I + ++N+ TL+ V+ G+DL
Sbjct: 103 LGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDVSCGRDL 162
Query: 170 KTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKK 229
K +L+ +AG + +IIGS + LT+ Y F+ A+TLP+LYEK +++VD L L+
Sbjct: 163 KNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFLYNTLGLLQN 222
Query: 230 QYAVLDHKLLSKIP 243
QY LD +L K+P
Sbjct: 223 QYQKLDKGVLGKVP 236
>Os01g0851300 Reticulon family protein
Length = 203
Score = 124 bits (311), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 94/168 (55%), Gaps = 1/168 (0%)
Query: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGI-GYHLLTFFCHSL 108
RL G LH +LGGG AD+VLWR K+ +G LA V W+LF + GY LL+F L
Sbjct: 9 RLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTLLSFVSSVL 68
Query: 109 MVFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKD 168
M+ L V FVWA AA +NR PP P +SE K A + +++A ++A GKD
Sbjct: 69 MIVLVVLFVWAKAARLLNRPPPPVPLIKISEDSMSKAAAAVGNILHKALQGFENIAHGKD 128
Query: 169 LKTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEV 216
+ V+ L +SI+G +TL Y ++A T+P L +KYE+ +
Sbjct: 129 SSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENI 176
>Os03g0336600 Reticulon family protein
Length = 231
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 98/186 (52%)
Query: 58 LHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVCFV 117
+H + GGGKAAD++LW+ + + ++ G T+ W LFE G LT L++ + V F+
Sbjct: 37 VHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEKSGLSFLTVCSDVLLILIVVQFI 96
Query: 118 WANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMTVA 177
A +N+ P P+ +LSE A R ++N + + GKD + + V
Sbjct: 97 RIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHDITLGKDFRLFFQVVL 156
Query: 178 GLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHK 237
LW +S+IG+ S +TL+Y + T+P LY K +++VD + + Y ++D
Sbjct: 157 LLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGMVHRNISRHYKIVDEN 216
Query: 238 LLSKIP 243
++S++P
Sbjct: 217 VMSRLP 222
>Os01g0691400 Reticulon family protein
Length = 202
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 12/160 (7%)
Query: 96 IGYHLLTFFCHSLMVFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINE 155
+ Y+++ C ++ + V F+W+NAA ++R PP+ P+ I+SE ++A + ++
Sbjct: 34 VEYNIIPLLCQIAILAMLVIFIWSNAAPLLDRAPPRIPEIIISEHAFREMALTVHYKLTY 93
Query: 156 AFLTLRHVASGKDLKTYLM------------TVAGLWFVSIIGSCFSFLTLSYTIFLMAY 203
L +A GKDLK +L+ V L +S IGS S +L Y FL A+
Sbjct: 94 TVSVLYDIACGKDLKRFLLFWTNNQIVYDIKVVGSLLVLSAIGSSCSLTSLLYIGFLCAH 153
Query: 204 TLPMLYEKYEDEVDVVGEKALIELKKQYAVLDHKLLSKIP 243
TLP+LY++Y+ EVD + K ++KK Y +D LL+KIP
Sbjct: 154 TLPVLYQRYKTEVDHLVAKGSDDIKKFYKKVDSNLLNKIP 193
>Os04g0670000 Reticulon family protein
Length = 199
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 90/162 (55%)
Query: 56 NPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVC 115
LH +LGGG ADLVLWR + S + +AG T +W LFE GY + ++L++ + +
Sbjct: 7 RSLHALLGGGAVADLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLLLVAIL 66
Query: 116 FVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMT 175
F WA +AS +NR P P +S+V K A IN+ +A +D ++
Sbjct: 67 FFWAKSASLLNRPLPPLPKLEVSDVVVEKAADRALVWINKVLAVGHDIAIKRDRSVFIKV 126
Query: 176 VAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVD 217
+ LW VS IG F+FLTL Y + + +P LYEKY+D+VD
Sbjct: 127 ILILWVVSYIGMLFNFLTLIYIGVMFSLLVPPLYEKYQDQVD 168
>Os04g0367400 Reticulon family protein
Length = 213
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 7/173 (4%)
Query: 63 GGGKAA-------DLVLWRDKQTSGSILAGVTVIWLLFEGIGYHLLTFFCHSLMVFLTVC 115
GGG ++ D+V+WR S +LA WLLF GY L+ + L++ LTV
Sbjct: 13 GGGVSSLIGEFVGDVVMWRRGDVSACLLAATVSGWLLFGSGGYTFLSLASNVLLLLLTVL 72
Query: 116 FVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKDLKTYLMT 175
F+WA AA +NR P P+ +S+ ++A +L +N F +A GKD +
Sbjct: 73 FLWAKAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVFHDIALGKDSVLFYQV 132
Query: 176 VAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEVDVVGEKALIELK 228
LW +SIIGS F TL YT + T+P LY+KYE+ +D A + L+
Sbjct: 133 FLSLWIISIIGSLTDFTTLCYTSIVAVLTIPALYQKYEECIDRYMRFAYLNLQ 185
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.141 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,473,775
Number of extensions: 268268
Number of successful extensions: 712
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 15
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)