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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0851300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reticulon family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.61 (0.0362) R2 : 0.742
β1 : -1.42 (0.134) R2dD : 0.0676 R2D : 0.0216
β2 : 2.31 (0.0932) R2dC : 0.411 R2C : 0.576
β3 : 1.64 (0.122) R2dE : 0.124 R2E : 0.265
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.296 (0.0775) R2dN8 : 0.0113 R2N8 : -0.00581
σ : 0.677
deviance : 211.45
__
_____
C
peak time of C : 23.9
E
wheather : temperature
threshold : 24.85
memory length : 719
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.5
open length of G : 5.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
208.04 0.678 4.61 -1.44 2.29 1.65 -0.923 0.194 -0.295 23.9 24.82 726 17.3 6.36
208.01 0.672 4.61 -1.44 2.29 1.68 -0.883 -- -0.297 23.9 24.77 721 17.4 6.25
211.5 0.677 4.61 -1.42 2.3 1.65 -- 0.0212 -0.294 23.9 24.84 715 17.5 5.93
211.45 0.677 4.61 -1.42 2.31 1.64 -- -- -0.296 23.9 24.85 719 17.5 5.9
272.82 0.769 4.71 -0.87 -- 3.29 -- 0.805 -0.584 -- 12.54 669 16.4 6.63
283.5 0.789 4.59 -1.19 2.84 -- -0.442 -- -0.236 0.542 -- -- -- --
284.33 0.79 4.59 -1.17 2.84 -- -- -- -0.234 0.556 -- -- -- --
232.7 0.71 4.54 -1.58 -- 3.32 -- -- -0.376 -- 8.332 737 15.5 6.31
263.28 0.756 4.56 -- 2.4 1.5 -- -- -0.0995 24 25.43 703 17.8 5.42
788.96 1.31 4.54 -1.07 -- -- -- -- -0.185 -- -- -- -- --
320.39 0.837 4.56 -- 2.82 -- -- -- -0.103 0.535 -- -- -- --
281.23 0.781 4.49 -- -- 2.96 -- -- -0.118 -- 1.964 762 15.8 4.73
819.18 1.34 4.51 -- -- -- -- -- -0.0664 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.64 temperature 25.0 720 > th dose dependent rect. 17 7
4 210.14 temperature 15.0 720 > th dose dependent rect. 17 4
5 210.22 temperature 20.0 10 > th dose dependent rect. 3 3
11 211.16 temperature 20.0 10 > th dose independent rect. 3 3
31 213.65 temperature 20.0 720 > th dose dependent rect. 18 1
39 214.46 humidity 70.0 720 > th dose independent rect. 19 7
69 215.90 wind 3.0 90 < th dose dependent rect. 3 2
73 216.36 wind 3.0 10 < th dose dependent rect. 3 3
85 217.22 temperature 25.0 720 > th dose dependent rect. 21 2
87 217.35 temperature 20.0 10 > th dose dependent rect. 24 6
103 218.63 temperature 20.0 270 > th dose dependent rect. 24 5
154 220.96 temperature 30.0 720 > th dose independent rect. 18 1
169 221.03 humidity 70.0 720 < th dose independent rect. 18 13
173 221.21 humidity 70.0 720 < th dose independent rect. 18 2
195 222.08 temperature 10.0 720 > th dose dependent rect. 17 11
221 222.70 temperature 20.0 10 > th dose independent rect. 24 6
222 222.71 humidity 80.0 90 > th dose dependent rect. 3 2
223 222.73 humidity 90.0 90 > th dose independent rect. 3 2
245 223.72 humidity 70.0 720 < th dose dependent rect. 19 12
251 223.81 wind 3.0 30 < th dose dependent rect. 24 6
253 224.00 humidity 70.0 720 < th dose dependent rect. 19 1
297 225.24 humidity 70.0 720 < th dose dependent rect. 18 14
318 225.59 temperature 25.0 720 > th dose dependent sin 12 NA
334 226.05 radiation 40.0 30 < th dose dependent rect. 12 18
337 226.12 temperature 25.0 90 < th dose independent rect. 3 2
339 226.15 wind 3.0 270 < th dose independent rect. 1 2
350 226.56 wind 3.0 90 < th dose independent rect. 3 2
351 226.56 wind 3.0 270 < th dose independent rect. 24 5
373 227.17 temperature 30.0 720 < th dose independent rect. 18 8
388 227.45 temperature 30.0 720 < th dose dependent rect. 17 6
408 228.22 wind 9.0 90 < th dose independent rect. 5 22
413 228.29 precipitation 0.1 90 < th dose independent rect. 3 2
414 228.29 precipitation 0.1 90 < th dose dependent rect. 3 2
416 228.34 temperature 30.0 720 < th dose dependent rect. 19 4
424 228.51 radiation 20.0 30 < th dose independent rect. 12 18
445 228.82 radiation 1.0 720 > th dose independent rect. 18 11
469 229.16 temperature 10.0 90 > th dose independent rect. 3 2
472 229.16 humidity 50.0 90 > th dose independent rect. 3 2
475 229.16 atmosphere 995.0 90 > th dose independent rect. 3 2
476 229.16 atmosphere 1010.0 90 < th dose independent rect. 3 2
478 229.16 radiation 20.0 90 < th dose independent rect. 3 2
481 229.16 temperature 10.0 90 > th dose independent rect. 5 22
484 229.21 radiation 40.0 90 < th dose dependent rect. 3 2
490 229.26 atmosphere 1005.0 90 > th dose independent rect. 3 2
493 229.27 radiation 1.0 720 > th dose independent rect. 18 1
503 229.29 radiation 1.0 90 < th dose independent rect. 3 2
513 229.54 radiation 30.0 1440 < th dose dependent rect. 18 9
581 230.33 atmosphere 1015.0 90 < th dose dependent rect. 3 2
586 230.38 temperature 10.0 720 > th dose dependent sin 15 NA
589 230.41 humidity 70.0 10 > th dose dependent rect. 3 3
626 230.80 radiation 1.0 90 < th dose dependent rect. 3 11
646 231.07 temperature 30.0 720 < th dose dependent rect. 19 2
647 231.08 wind 3.0 10 < th dose independent rect. 3 3
680 231.25 temperature 25.0 720 < th dose independent rect. 16 8
702 231.41 radiation 20.0 4320 < th dose independent rect. 3 3
710 231.52 humidity 50.0 1440 < th dose independent rect. 16 1
716 231.58 radiation 1.0 90 < th dose dependent rect. 3 14
747 231.77 radiation 1.0 720 > th dose dependent rect. 18 11
762 232.00 temperature 30.0 1440 < th dose independent rect. 18 2
767 232.04 humidity 50.0 1440 < th dose dependent rect. 16 1
768 232.06 atmosphere 1005.0 10 > th dose independent rect. 3 3
773 232.09 radiation 1.0 720 > th dose dependent rect. 18 1
786 232.13 radiation 20.0 1440 < th dose dependent rect. 18 7
835 232.56 radiation 1.0 90 < th dose independent rect. 3 11
881 233.16 temperature 30.0 1440 < th dose independent rect. 18 13
890 233.22 humidity 80.0 10 > th dose independent rect. 3 3
940 233.60 wind 9.0 10 < th dose independent rect. 6 21
947 233.64 precipitation 0.1 10 < th dose independent rect. 3 3
948 233.64 precipitation 0.1 10 < th dose dependent rect. 3 3