BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0851300 Os01g0851300|AK101770
(203 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0851300 Reticulon family protein 355 2e-98
Os04g0367400 Reticulon family protein 118 4e-27
Os06g0503400 Reticulon family protein 96 1e-20
Os07g0142000 Reticulon family protein 95 4e-20
Os01g0736900 Reticulon family protein 94 6e-20
Os05g0312500 Reticulon family protein 91 7e-19
Os02g0265900 Reticulon family protein 90 1e-18
Os05g0526400 Reticulon family protein 86 2e-17
Os04g0670000 Reticulon family protein 84 6e-17
Os03g0781700 Reticulon family protein 77 7e-15
Os05g0550100 73 2e-13
Os01g0139000 Reticulon family protein 72 2e-13
Os03g0336600 Reticulon family protein 65 3e-11
>Os01g0851300 Reticulon family protein
Length = 203
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 179/203 (88%), Positives = 179/203 (88%)
Query: 1 MDASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTX 60
MDASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYT
Sbjct: 1 MDASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTL 60
Query: 61 XXXXXXXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGF 120
WAKAARLLNR LIKISEDSMSKAAAAVGNILHKALQGF
Sbjct: 61 LSFVSSVLMIVLVVLFVWAKAARLLNRPPPPVPLIKISEDSMSKAAAAVGNILHKALQGF 120
Query: 121 ENIAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL 180
ENIAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL
Sbjct: 121 ENIAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL 180
Query: 181 NQASANIQACGQAWKAYKSKIKN 203
NQASANIQACGQAWKAYKSKIKN
Sbjct: 181 NQASANIQACGQAWKAYKSKIKN 203
>Os04g0367400 Reticulon family protein
Length = 213
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 3/200 (1%)
Query: 1 MDASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTX 60
MD D C G + L+G + DVV+WRR +V+ LAA + W+LF GYT
Sbjct: 1 MDRRDDSC-CPGGGGGVSSLIGE-FVGDVVMWRRGDVSACLLAATVSGWLLFGS-GGYTF 57
Query: 61 XXXXXXXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGF 120
WAKAARLLNR ++IS+ +++ AA + + ++ F
Sbjct: 58 LSLASNVLLLLLTVLFLWAKAARLLNRPEPPIPEMRISQQVVNEVAALLHSGMNTVFSVF 117
Query: 121 ENIAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL 180
+IA GKDS LFY++ L +ISI+G +TD TL Y +V LTIPAL KYEE I +++
Sbjct: 118 HDIALGKDSVLFYQVFLSLWIISIIGSLTDFTTLCYTSIVAVLTIPALYQKYEECIDRYM 177
Query: 181 NQASANIQACGQAWKAYKSK 200
A N+Q ++ + +K
Sbjct: 178 RFAYLNLQMYEMVYERFSAK 197
>Os06g0503400 Reticulon family protein
Length = 265
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 3/185 (1%)
Query: 6 QGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXXXX 65
+G RLLG S+H LGGG ADV+LW+ K+ + + W+LF L Y
Sbjct: 60 RGFRLLGEDTSVHKALGGGKTADVLLWKDKKTSAVVIGGATVIWILFEVL-DYHLLTLLS 118
Query: 66 XXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFENIAH 125
W+KA + + +++I ED + A+ + +++AL F IA
Sbjct: 119 HVMIGALAILFLWSKATTFIKKSPPDIPVVQIPEDVAVNVSRALRSDINRALHLFREIAL 178
Query: 126 GKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQASA 185
G D F ++ L ++S VG D +TL+Y +++ T+P L DKY++ + F +A +
Sbjct: 179 GHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYDKYQDKVDHFAGRAHS 238
Query: 186 NIQAC 190
+AC
Sbjct: 239 --EAC 241
>Os07g0142000 Reticulon family protein
Length = 246
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 1/177 (0%)
Query: 4 SDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXX 63
SDQ RL G Q+S+H +LGGG ADV+LWR K+++ LA A WV F L Y
Sbjct: 38 SDQAKRLFGGQKSVHHVLGGGKSADVLLWRNKKISSSVLAVATAVWVFFEWL-DYHFLTI 96
Query: 64 XXXXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFENI 123
W+ A +LN +++ ++ + +A+G ++K L +++
Sbjct: 97 ACFVLVLGMVVQFAWSTFAGMLNGSPSKVPRVELPDELFANIGSAIGTQVNKFLGTLQDV 156
Query: 124 AHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL 180
+ G+D F +++ +I+G +L+T++Y V A T+P L +K +E + +FL
Sbjct: 157 SCGRDLKNFLLVIAGFFAAAIIGSWCNLLTVIYIGFVCAHTLPVLYEKNQEKVDEFL 213
>Os01g0736900 Reticulon family protein
Length = 253
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 1/180 (0%)
Query: 9 RLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXXXXXXX 68
RL G +R +H +LGGG AD+VLWR K+++G LA A W+LF + Y
Sbjct: 51 RLFGRERPVHSVLGGGKPADLVLWRNKKISGGVLAGATAIWLLFEIME-YHLLTLVCHCL 109
Query: 69 XXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFENIAHGKD 128
W+ A+ +++ +KI ED A ++ +++ I HG+D
Sbjct: 110 ILSLAVLFLWSNASTFIHKSPPNIPEVKIPEDLTVNIALSLRYEINRGFATLREIGHGRD 169
Query: 129 SSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQASANIQ 188
F +++ L ++S++G + +TL Y V T+P L +KYE+ + F +A +
Sbjct: 170 LKKFLIVIAGLWILSVLGSSCNFLTLFYIVFVALYTVPVLYEKYEDKVDAFGEKAEIEFK 229
>Os05g0312500 Reticulon family protein
Length = 251
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 1/168 (0%)
Query: 9 RLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXXXXXXX 68
RL G LH +LGGG AD+VLWR K+ +G LA V W+LF + GY
Sbjct: 50 RLFGRTNPLHHVLGGGKAADLVLWRDKQTSGSILAGVTVIWLLFEGI-GYHLLTFFCHSL 108
Query: 69 XXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFENIAHGKD 128
WA AA +NR +SE K A + +++A ++A GKD
Sbjct: 109 MVFLTVCFVWANAASFINRGPPKFPDAILSEVQCLKIAHILRKEINEAFLTLRHVASGKD 168
Query: 129 SSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENI 176
+ V+ L +SI+G +TL Y ++A T+P L +KYE+ +
Sbjct: 169 LKTYLMTVAGLWFVSIIGSCFSFLTLSYTIFLMAYTLPMLYEKYEDEV 216
>Os02g0265900 Reticulon family protein
Length = 230
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 1/185 (0%)
Query: 3 ASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXX 62
A +G RLLG +S+H LGGG ADV+LW+ K+++ + WVLF + Y
Sbjct: 21 ARPRGFRLLGGDKSVHQALGGGKAADVLLWKDKKISAAVIGGATVLWVLFEVV-DYHFLT 79
Query: 63 XXXXXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFEN 122
W+KA + + +KISED A A+ +++AL
Sbjct: 80 LISHVLIGVLAILFLWSKATIFIKKSPPNIPEVKISEDLAVNVALALRTDINQALHLLRE 139
Query: 123 IAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQ 182
I+ G D F ++ L ++S +G + D +TL Y +++ T+P L KY++ + F +
Sbjct: 140 ISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVPILYHKYQDKVDHFAGK 199
Query: 183 ASANI 187
A +
Sbjct: 200 AHVEL 204
>Os05g0526400 Reticulon family protein
Length = 251
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Query: 9 RLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXXXXXXX 68
RL G ++ +H +LGGG AD+ LWR K+++ LA A W+LF + Y
Sbjct: 49 RLFGREKPVHSVLGGGKPADLFLWRNKKISVGVLAGATAIWLLFEVM-DYHLLTLLCHCI 107
Query: 69 XXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFENIAHGKD 128
W+ A+ +N+ +KI ED A ++ +++ I G D
Sbjct: 108 ILTLAMLFLWSNASTFINKSPPNIPEVKIPEDLAVNVARSLRFEINRGFATLREIGQGHD 167
Query: 129 SSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQASANIQ 188
F +V L ++S++G + +TL Y ++ T+P L +KYE+ I F +A ++
Sbjct: 168 LKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLYEKYEDQIDAFGEKAMIELK 227
>Os04g0670000 Reticulon family protein
Length = 199
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 98/173 (56%), Gaps = 1/173 (0%)
Query: 13 AQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXXXXXXXXXXX 72
++RSLH LLGGGA+AD+VLWRR+ V+ ++A A W LF GY+
Sbjct: 5 SRRSLHALLGGGAVADLVLWRRRNVSAAAVAGATAVWFLFER-AGYSFPSVMANALLLLV 63
Query: 73 XXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFENIAHGKDSSLF 132
WAK+A LLNR +++S+ + KAA ++K L +IA +D S+F
Sbjct: 64 AILFFWAKSASLLNRPLPPLPKLEVSDVVVEKAADRALVWINKVLAVGHDIAIKRDRSVF 123
Query: 133 YKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQASA 185
K++ +L ++S +G + + +TL+Y ++ +L +P L +KY++ + + + A +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYIGVMFSLLVPPLYEKYQDQVDEKIGMAHS 176
>Os03g0781700 Reticulon family protein
Length = 247
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 2/179 (1%)
Query: 3 ASDQ-GCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXX 61
ASD+ +L G Q+++H +LGGG ADV+LWR K+++ LA A WV F L Y
Sbjct: 37 ASDKMKEKLFGRQKTIHRVLGGGKPADVLLWRNKKISSSVLALATAIWVFFEWL-DYHFL 95
Query: 62 XXXXXXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFE 121
W+ + L+ +++ E+ A AVG ++K L +
Sbjct: 96 TIVSFALVLGMVVQFVWSNFSSALSGSPSKVPRVELPEELFVNIAVAVGTQVNKFLSFLQ 155
Query: 122 NIAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFL 180
+++ ++ F + L +++G + +T++Y V A T+P L +KYE+ + FL
Sbjct: 156 DVSCERNLKHFVLAIVGLWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYEKYEDQVDDFL 214
>Os05g0550100
Length = 788
Score = 72.8 bits (177), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 16/197 (8%)
Query: 9 RLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXXXXXXX 68
RL Q+ +H +LGG +AD++LWR + ++ LA W LF + Y
Sbjct: 18 RLFHRQKPVHKILGGRKVADIMLWRDRNLSAGILAGATLIWFLFD-VAEYNLVTLLCHIA 76
Query: 69 XXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFE----NIA 124
W+ AA L +R + +SE + + A LH + F +I+
Sbjct: 77 LLGMLVLFIWSNAAPLFDRAPPRIPEVIVSEHAFRELALT----LHSKVAHFSAVLYDIS 132
Query: 125 HGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQAS 184
GK+ F ++ L +++++G TL+Y + ALT+PAL ++YE + + +
Sbjct: 133 CGKELRKFLAVIGSLWILAVIGETCSFTTLLYVGFLCALTLPALYERYETEVDHLVAKG- 191
Query: 185 ANIQACGQAWKAYKSKI 201
GQ K + KI
Sbjct: 192 ------GQDLKKFYKKI 202
>Os01g0139000 Reticulon family protein
Length = 213
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 1/186 (0%)
Query: 4 SDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXXX 63
+ + +L G +R LH LGG AD++LWR + V+ +A +W LF + Y
Sbjct: 7 THRTTKLFGRERPLHDALGGHKAADIILWRERRVSASIVAGATVAWYLFE-VAEYHFLSL 65
Query: 64 XXXXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFENI 123
WA A+ N I +SE + + A+ + L + +I
Sbjct: 66 ACYLAMLGMLVVFIWANASAFFNLPAPRIPEIFVSERTTRQVILALHSRLTWFVHRLYDI 125
Query: 124 AHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQA 183
A GKD +F V L + S++ +TL+Y ++ +T+P + + YE + ++ A
Sbjct: 126 ACGKDIKMFILTVFSLFIASVIASCFSSLTLLYLVVLGTMTLPVMYENYESEVDHLVSTA 185
Query: 184 SANIQA 189
++++
Sbjct: 186 VHDLRS 191
>Os03g0336600 Reticulon family protein
Length = 231
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 1/185 (0%)
Query: 3 ASDQGCRLLGAQRSLHGLLGGGAMADVVLWRRKEVAGWSLAAVAASWVLFYCLPGYTXXX 62
A+D ++ S+H + GGG AD++LW+R V + +W LF G +
Sbjct: 23 AADPSTSGTASRLSVHRIAGGGKAADIILWKRGRVTIGVIFGATMAWWLFEK-SGLSFLT 81
Query: 63 XXXXXXXXXXXXXXXWAKAARLLNRXXXXXXLIKISEDSMSKAAAAVGNILHKALQGFEN 122
K A LLN+ + +SE+ +S AAA+ ++ L +
Sbjct: 82 VCSDVLLILIVVQFIRIKVAGLLNKQPRPLPELVLSEEMVSNAAASFRVKVNNMLMIAHD 141
Query: 123 IAHGKDSSLFYKMVSVLLLISIVGRVTDLITLVYACLVLALTIPALVDKYEENIAKFLNQ 182
I GKD LF+++V +L L+S++G ITL Y + +TIPAL K +E + ++
Sbjct: 142 ITLGKDFRLFFQVVLLLWLLSVIGNFCSSITLAYFGTIALVTIPALYSKNQEQVDRYAGM 201
Query: 183 ASANI 187
NI
Sbjct: 202 VHRNI 206
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,632,197
Number of extensions: 174043
Number of successful extensions: 588
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 13
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)