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Os01g0736900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reticulon family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0174) R2 : 0.667
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.24 (0.0415) R2dC : 0.649 R2C : 0.638
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.206 (0.0367) R2dN8 : 0.0297 R2N8 : 0.0184
σ : 0.329
deviance : 49.33
__
_____
C
peak time of C : 12.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.72 0.273 12.9 0.166 0.166 -0.964 0.0543 -0.442 0.165 10.1 6.81 96 -- --
33.79 0.271 12.9 0.165 0.136 -0.961 0.592 -- 0.16 11.8 6.667 84 -- --
33.72 0.27 12.9 0.167 0.161 -0.97 -- -0.478 0.165 9.89 6.728 95 -- --
35.04 0.276 12.9 0.169 0.141 -0.988 -- -- 0.162 9.61 6.49 95 -- --
34.21 0.272 12.9 0.17 -- -1.06 -- -0.476 0.152 -- 6.689 81 -- --
46.81 0.321 12.9 0.157 1.24 -- 0.622 -- 0.223 12.3 -- -- -- --
48.47 0.326 12.9 0.181 1.24 -- -- -- 0.226 12.3 -- -- -- --
35.54 0.278 12.9 0.175 -- -1.06 -- -- 0.154 -- 6.49 84 -- --
35.76 0.279 12.9 -- 0.136 -1.01 -- -- 0.145 8.87 6.32 99 -- --
144.8 0.562 12.9 0.139 -- -- -- -- 0.206 -- -- -- -- --
49.33 0.329 12.9 -- 1.24 -- -- -- 0.206 12.3 -- -- -- --
36.34 0.281 12.9 -- -- -1.06 -- -- 0.135 -- 6.288 84 -- --
145.31 0.563 12.9 -- -- -- -- -- 0.191 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.01 radiation 1.0 90 < th dose dependent sin 0 NA
2 32.20 radiation 1.0 90 < th dose independent sin 0 NA
3 32.21 radiation 1.0 90 > th dose independent sin 0 NA
7 33.24 radiation 1.0 90 < th dose independent rect. 3 17
8 33.75 radiation 1.0 90 < th dose dependent rect. 3 17
16 34.31 radiation 10.0 90 < th dose dependent rect. 13 20
20 34.34 radiation 1.0 90 < th dose dependent rect. 5 14
31 34.57 radiation 10.0 90 < th dose dependent rect. 9 23
33 34.57 radiation 10.0 90 < th dose dependent rect. 15 23
35 34.62 radiation 10.0 90 < th dose dependent rect. 7 23
40 34.77 radiation 10.0 90 < th dose dependent no NA NA
45 34.94 radiation 10.0 90 < th dose dependent rect. 15 18
54 35.03 radiation 1.0 30 > th dose independent rect. 6 13
72 35.15 temperature 30.0 10 < th dose dependent rect. 3 17
81 35.25 radiation 10.0 90 < th dose dependent rect. 1 22
90 35.47 humidity 70.0 10 > th dose dependent rect. 3 17
96 35.51 temperature 10.0 30 > th dose dependent rect. 6 21
109 35.72 radiation 1.0 270 > th dose independent rect. 18 22
127 35.83 radiation 1.0 270 < th dose dependent rect. 23 21
133 35.86 radiation 10.0 90 < th dose dependent rect. 23 23
152 35.93 humidity 90.0 30 < th dose independent rect. 6 12
159 35.96 radiation 10.0 90 < th dose dependent rect. 21 23
160 35.97 radiation 1.0 270 < th dose independent rect. 23 21
180 36.03 radiation 1.0 90 < th dose independent rect. 1 22
343 37.03 radiation 1.0 90 < th dose dependent rect. 9 10
346 37.03 temperature 10.0 30 > th dose dependent rect. 20 22
457 37.39 radiation 30.0 270 < th dose independent rect. 15 14
460 37.40 temperature 10.0 30 > th dose dependent rect. 6 12
464 37.42 humidity 90.0 30 < th dose independent rect. 20 22
468 37.44 radiation 1.0 90 < th dose independent rect. 7 12
499 37.55 radiation 10.0 30 < th dose dependent rect. 3 23
541 37.63 radiation 1.0 720 > th dose independent rect. 12 19
546 37.64 radiation 1.0 90 > th dose independent no NA NA
599 37.66 radiation 1.0 90 < th dose independent no NA NA
600 37.66 radiation 1.0 90 < th dose independent rect. 9 23
604 37.67 radiation 1.0 90 < th dose independent rect. 12 23
627 37.71 radiation 1.0 90 < th dose dependent rect. 17 2
644 37.76 radiation 1.0 90 < th dose independent rect. 9 10
652 37.77 radiation 1.0 90 < th dose independent rect. 15 23
692 37.87 humidity 90.0 30 < th dose independent rect. 23 19
697 37.87 radiation 40.0 270 < th dose dependent rect. 15 14
711 37.92 humidity 80.0 10 > th dose independent rect. 3 17
712 37.92 radiation 10.0 720 < th dose dependent rect. 17 2
721 37.93 temperature 20.0 90 > th dose independent rect. 6 11
727 37.94 humidity 60.0 14400 > th dose independent rect. 21 7
729 37.94 humidity 50.0 270 > th dose independent rect. 15 14
780 38.05 radiation 1.0 720 < th dose independent rect. 17 2
814 38.10 radiation 1.0 90 < th dose independent rect. 17 23
834 38.15 precipitation 0.1 270 < th dose independent rect. 5 10
835 38.15 precipitation 0.1 270 < th dose dependent rect. 5 10
861 38.21 temperature 25.0 30 < th dose independent rect. 3 18
865 38.22 humidity 80.0 10 > th dose dependent sin 0 NA
922 38.32 radiation 20.0 43200 < th dose dependent rect. 21 7
969 38.38 humidity 50.0 90 > th dose independent rect. 17 13
976 38.40 temperature 15.0 270 > th dose independent rect. 20 4
980 38.40 temperature 10.0 270 > th dose dependent rect. 20 13
989 38.41 temperature 10.0 270 > th dose dependent rect. 20 4
995 38.42 wind 9.0 270 < th dose independent rect. 15 14