Os02g0265900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os02g0265900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.78 | 0.3 | 12.8 | -0.569 | 0.102 | 0.954 | 0.169 | -2.4 | -0.128 | 4.06 | 20.91 | 710 | -- | -- |
| 43.97 | 0.309 | 12.7 | -0.0419 | 0.00309 | 0.996 | 0.36 | -- | 0.0447 | 4.27 | 15.07 | 778 | -- | -- |
| 40.83 | 0.298 | 12.8 | -0.591 | 0.115 | 0.972 | -- | -2.49 | -0.136 | 4.79 | 21.03 | 703 | -- | -- |
| 44.03 | 0.309 | 12.7 | -0.0903 | 0.0556 | 1.04 | -- | -- | 0.00538 | 3.39 | 14.16 | 736 | -- | -- |
| 41.06 | 0.298 | 12.8 | -0.611 | -- | 0.924 | -- | -2.4 | -0.138 | -- | 21.18 | 843 | -- | -- |
| 57.66 | 0.356 | 12.7 | 0.169 | 0.238 | -- | -0.138 | -- | 0.165 | 21.4 | -- | -- | -- | -- |
| 57.73 | 0.356 | 12.7 | 0.174 | 0.238 | -- | -- | -- | 0.165 | 21.6 | -- | -- | -- | -- |
| 44.09 | 0.309 | 12.7 | -0.0973 | -- | 1.03 | -- | -- | 0.00351 | -- | 13.04 | 807 | -- | -- |
| 44.22 | 0.31 | 12.7 | -- | 0.0541 | 0.997 | -- | -- | 0.0203 | 2.57 | 14.11 | 734 | -- | -- |
| 61.08 | 0.365 | 12.7 | 0.176 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 58.52 | 0.358 | 12.7 | -- | 0.239 | -- | -- | -- | 0.146 | 21.6 | -- | -- | -- | -- |
| 44.31 | 0.31 | 12.7 | -- | -- | 1 | -- | -- | 0.0196 | -- | 13.47 | 784 | -- | -- |
| 61.89 | 0.367 | 12.7 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.25 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 3 | 38.39 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 4 | 38.59 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 7 | 38.62 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 13 | 38.82 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 25 | 39.03 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 64 | 39.34 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 98 | 39.54 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 105 | 39.58 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 127 | 39.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 148 | 39.79 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 151 | 39.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 205 | 40.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 226 | 40.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 237 | 40.14 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 238 | 40.14 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 240 | 40.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 258 | 40.21 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 259 | 40.21 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 276 | 40.25 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 312 | 40.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 319 | 40.36 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 329 | 40.39 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 342 | 40.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 11 |
| 345 | 40.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 362 | 40.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 407 | 40.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 415 | 40.53 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 426 | 40.54 | radiation | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 437 | 40.56 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 478 | 40.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 511 | 40.65 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 515 | 40.65 | wind | 9 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 516 | 40.65 | humidity | 70 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 551 | 40.71 | wind | 5 | 14400 | > th | dose independent | sin | 22 | NA |
| 555 | 40.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 583 | 40.75 | wind | 3 | 43200 | > th | dose dependent | sin | 19 | NA |
| 628 | 40.81 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 647 | 40.83 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 712 | 40.86 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 713 | 40.86 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 729 | 40.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 771 | 40.89 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 833 | 40.94 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 844 | 40.95 | radiation | 40 | 43200 | > th | dose independent | sin | 10 | NA |
| 879 | 40.99 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 11 |
| 925 | 41.02 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 989 | 41.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |